nvictus

# Notes
# -----
# * Cooler's stored bin IDs are 0-based. However, for consistency with R, this API should take 
#   1-based indexing as input for table row and matrix range queries.
# * See Ilya's implementation: https://github.com/dozmorovlab/HiCcompare/issues/9
library(hdf5r)
library(dplyr)
library(tibble)
library(purrr)
library(data.table)

nvictus

"\e[A": history-search-backward
"\e[B": history-search-forward
set show-all-if-ambiguous on
set completion-ignore-case on

nvictus

nvictus

import traceback
import warnings
import sys

def warn_with_traceback(message, category, filename, lineno, file=None, line=None):

    log = file if hasattr(file,'write') else sys.stderr
    traceback.print_stack(file=log)
    log.write(warnings.formatwarning(message, category, filename, lineno, line))

nvictus

nvictus

nvictus

#!/usr/bin/env python
# -*- coding: utf-8 -*-
import subprocess
import tempfile
import requests
import argparse
import textwrap
import sys

nvictus

nvictus

#!/usr/bin/env python
# -*- coding: utf-8 -*-
from __future__ import division, print_function
from multiprocess import Pool
from functools import partial
from itertools import chain
import itertools
import argparse
import sys

nvictus