obonyojimmy

"""Python 3 script to get partial protein HGVS given NCBI dbSNP ID

Example:

$ python3 protein_hgvs_for_snp_id.py 334
snp_id:
334
gene:
{'name': 'HBB', 'gene_id': '3043'}
protein_change_hgvs:

obonyojimmy

var http = require('http');
var router = require('routes')();
var Busboy = require('busboy');
var AWS = require('aws-sdk');
var inspect = require('util').inspect;
var port = 5000;

// Define s3-upload-stream with S3 credentials.
var s3Stream = require('s3-upload-stream')(new AWS.S3({
  accessKeyId: '',

obonyojimmy

// At top, import immutable
import { Map } from 'immutable';

// Later, in constructor...
this.state = {
  // Create an immutable map in state using immutable.js
  user: Map({ firstName: 'Cory', lastName: 'House'})
};

updateState({target}) {

obonyojimmy

/*
 * Valid options are:
 * - chunk_read_callback: a function that accepts the read chunk
                          as its only argument. If binary option
                          is set to true, this function will receive
                          an instance of ArrayBuffer, otherwise a String
 * - error_callback:      an optional function that accepts an object of type
                          FileReader.error
 * - success:             an optional function invoked as soon as the whole file has been
                          read successfully

obonyojimmy

/*
by Martin Güther @magegu

just call it: 

uploadFile(absoluteFilePath, callback);
*/

var path = require('path');
var async = require('async');

obonyojimmy

const fr = new FileReader()
    fr.onload = function() {
      let data = fr.result
      let total = data.byteLength;
      let offset = 0;
      
      var upload = function() {
        var length = 64 * 1024; // chunk size
      
        // adjust the last chunk size

obonyojimmy

$(document).on('change', '#upload', addBackgroundImage);

function addBackgroundImage(event) {
    var reader = new FileReader();
    var readerBase64 = new FileReader();
    var image = event.target.files[0];
    
    reader.onloadend = function() {
        var realMimeType = getRealMimeType(reader);
        if (realMimeType !== 'unknown') {

obonyojimmy

function sanitizeJSON(unsanitized){	
    return unsanitized.replace(/\\/g, "\\\\").replace(/\n/g, "\\n").replace(/\r/g, "\\r").replace(/\t/g, "\\t").replace(/\f/g, "\\f").replace(/"/g,"\\\"").replace(/'/g,"\\\'").replace(/\&/g, "\\&"); 
}

obonyojimmy

Create a Meteor app and put the client_/server_ files in a client/server directories. Also, create a public dir to save the uploaded files.

obonyojimmy

//License CC0 1.0: https://creativecommons.org/publicdomain/zero/1.0/

class Deferred extends React.Component {
    constructor(props) {
        super(props);
        this.state = {
            value: ''
        };
    }
    componentDidMount() {