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<docs>
# HPA Cell Atlas Images

This plugin uses the virtual stack api of ImageJ.JS to display all the HPA Cell Atlas images (v18).
</docs>

<config lang="json">
{
  "name": "HPACellAtlasImages",
  "type": "iframe",

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ImageJ.JS: ImageJ in the browser

Wei OUYANG

Emma Lundberg Group @ KTH Royal Institute of Technology

---

ImageJ.JS

• ImageJ compiled into Javascript (with CheerpJ)
• Running in web browser, support tablets & mobile phones

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<docs lang="markdown">
[TODO: write documentation for this plugin.]
</docs>

<config lang="json">
{
  "name": "DownloadFileWebPython",
  "type": "web-python",
  "version": "0.1.0",
  "description": "[TODO: describe this plugin with one sentence.]",

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<docs lang="markdown">
## PyImageJ demo

A PyImageJ demo ported from https://github.com/imagej/pyimagej

</docs>

<config lang="json">
{
    "name": "N2V-Fiji-Demo",

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<docs lang="markdown">
[TODO: write documentation for this plugin.]
</docs>

<config lang="json">
{
  "name": "PythonPlugin",
  "type": "web-python",
  "version": "0.1.0",
  "description": "[TODO: describe this plugin with one sentence.]",

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import {InferenceSession, Tensor} from  'onnxruntime-web';
import Jimp from 'jimp/es';

const COLORS =  ["red", "green", "blue", "yellow"]

async function handleRun(e) {
  e.preventDefault();
  // create an inference session, using WebGL backend. (default is 'wasm')
  const baseURL = 'https://images.proteinatlas.org/115/672_E2_1_'
  const imgTensor = new Float32Array(1024*1024*4)

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<docs lang="markdown">
[TODO: write documentation for this plugin.]
</docs>

<config lang="json">
{
  "name": "HPASingleCellTriton",
  "type": "web-python",
  "version": "0.1.0",
  "description": "[TODO: describe this plugin with one sentence.]",

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import micropip
await micropip.install('pyotritonclient')

import io
from PIL import Image
import matplotlib.pyplot as plt
import numpy as np
from js import fetch
from pyotritonclient import get_config, execute_model

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<config lang="json">
{
  "name": "BIO-RDF-Validator",
  "type": "web-python",
  "version": "0.1.0",
  "description": "A spec validator for bioimage RDF files.",
  "tags": [],
  "ui": "",
  "cover": "",
  "inputs": null,

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<docs lang="markdown">
# VizarrDemo

A demo plugin which uses Vizarr to visualize zarr images

See https://github.com/hms-dbmi/vizarr for details.

</docs>

<config lang="json">