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Process: Python [68708]
Path:
/usr/local/Cellar/python/2.7.5/Frameworks/Python.framework/Versions/2.7/Resources/Python.app/Contents/MacOS/Python
Identifier: Python
Version: 2.7.5 (2.7.5)
Code Type: X86-64 (Native)
Parent Process: Python [68693]
Responsible: Terminal [256]
User ID: 501
@olgabot
olgabot / error.log
Created November 18, 2013 22:23
brew install matplotlib Mavericks system error
Process: Python [11803]
Path: /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/Resources/Python.app/Contents/MacOS/Python
Identifier: Python
Version: 2.7.6 (2.7.6)
Code Type: X86-64 (Native)
Parent Process: Python [11788]
Responsible: Terminal [251]
User ID: 501
Date/Time: 2013-11-18 14:20:55.382 -0800
@olgabot
olgabot / error.log
Created November 20, 2013 19:41
Python quit unexpectedly during `brew install matplotlib`
Process: Python [3349]
Path: /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/Resources/Python.app/Contents/MacOS/Python
Identifier: Python
Version: 2.7.6 (2.7.6)
Code Type: X86-64 (Native)
Parent Process: Python [3334]
Responsible: Terminal [2470]
User ID: 501
Date/Time: 2013-11-20 11:40:22.497 -0800
Process: Python [39549]
Path: /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/Resources/Python.app/Contents/MacOS/Python
Identifier: Python
Version: 2.7.6 (2.7.6)
Code Type: X86-64 (Native)
Parent Process: Python [39534]
Responsible: Terminal [2470]
User ID: 501
Date/Time: 2013-11-20 13:04:38.486 -0800
@olgabot
olgabot / after reinstalling cairo
Created November 20, 2013 21:06
Python quit unexpectedly
Process: Python [16161]
Path: /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/Resources/Python.app/Contents/MacOS/Python
Identifier: Python
Version: 2.7.6 (2.7.6)
Code Type: X86-64 (Native)
Parent Process: Python [16146]
Responsible: Terminal [2470]
User ID: 501
Date/Time: 2013-11-20 12:45:53.180 -0800
@olgabot
olgabot / pydata-nyc-2013.ipynb
Created December 4, 2013 15:08
PyData NYC Presentation
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@olgabot
olgabot / pandas_clustered_heatmap.ipynb
Last active December 30, 2015 08:09
Pandas clustered heatmap
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@olgabot
olgabot / violinplots
Created December 11, 2013 00:18
violin plots
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@olgabot
olgabot / bw_method_statsmodels_violinplot
Created December 11, 2013 18:12
Adding bandwidth method to statsmodels violinplot
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@olgabot
olgabot / titus_brown_intro.md
Last active December 31, 2015 04:58
My introduction for Dr. C. Titus Brown's talk at UCSD.

Dr. Titus Brown is an assistant professor at Michigan State University, with joint appointments in Computer Science and Engineering, and Microbiology and Molecular Genetics. Before grad school at Caltech, he lived the free spirited life at Reed College, in Portland, Oregon. At Caltech, he first studied evolution in the context of a "earthshine," or the reflection of light from Earth to the moon, before coming to genomics. Since seeing the light of bioinformatics, Dr. Brown has studied regulatory networks, evolution, and development, and now studies a mishmash of all of the above, glued together with genome assembly and kmer counting.

Besides being a successful researcher, Dr. Brown is also heavily involved in the Python and open source communities. He publishes much of his research to the open paper repository arXiv, with open code via iPython notebooks

(as a side note, he is also extremely responsive. I was using his lab's k-mer counter khmer. I w