Page pageneck
allgenesconsidered
/ example.sh
Last active
March 26, 2025 17:59
Pulling more reference files from the GATK servers
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| #!/bin/bash | |
| cd /data/home/molvera/res | |
| wget -c ftp://[email protected]/bundle/hg38/1000G_phase1.snps.high_confidence.hg38.vcf.gz | |
| wget -c ftp://[email protected]/bundle/hg38/1000G_phase1.snps.high_confidence.hg38.vcf.gz.tbi | |
| wget -c ftp://[email protected]/bundle/hg38/Mills_and_1000G_gold_standard.indels.hg38.vcf.gz | |
| wget -c ftp://[email protected]/bundle/hg38/Mills_and_1000G_gold_standard.indels.hg38.vcf.gz.tbi | |
| wget -c ftp://[email protected]/bundle/hg38/hapmap_3.3.hg38.vcf.gz | |
| wget -c ftp://[email protected]/bundle/hg38/hapmap_3.3.hg38.vcf.gz.tbi |