trey

Creating a Happy Git Environment on OS X

Step 1: Install Git

brew install git bash-completion

Configure things:

git config --global user.name "Your Name"

git config --global user.email "[email protected]"

arq5x

##########################################
# Step 0. setup a list of sample names.  
# Assume that each of your gzipped
# FASTQ files is named as follows:
# sample1.1.fq.gz
# sample1.2.fq.gz
# sample2.1.fq.gz
# sample2.2.fq.gz
# ...
# sampleN.1.fq.gz

MohamedAlaa

tmux shortcuts & cheatsheet

start new:

tmux

start new with session name:

tmux new -s myname

rarylson

-- AppleScript to create a new file in Finder
--
-- Use it in Automator, with the following configuration:
-- - Service receives: no input
-- - In: Finder.app
--
-- References:
--  - http://apple.stackexchange.com/a/129702
--  - http://stackoverflow.com/a/6125252/2530295
--  - http://www.russellbeattie.com/blog/fun-with-the-os-x-finder-and-applescript

simonw

How to recover lost Python source code if it's still resident in-memory

I screwed up using git ("git checkout --" on the wrong file) and managed to delete the code I had just written... but it was still running in a process in a docker container. Here's how I got it back, using https://pypi.python.org/pypi/pyrasite/ and https://pypi.python.org/pypi/uncompyle6

Attach a shell to the docker container

Install GDB (needed by pyrasite)

apt-get update && apt-get install gdb