pangyuteng



docker run -it -u $(id -u):$(id -g) -w $PWD -v /mnt:/mnt pangyuteng/dcm:latest bash

apt-get install wkhtmltopdf
pip install imgkit,pdfkit,jinja2

source /anaconda3/bin/activate py36

wget https://github.com/jonclayden/RNifti/raw/master/inst/extdata/example.nii.gz

python isosurface_vtk.py

AMICO installation instruction for windows x64:

conda create -n py27 python=2.7
activate py27
conda install -c intel mkl
conda install numpy scipy six
pip install nibabel
conda install -c conda-forge dipy
pip install https://github.com/samuelstjean/spams-python/releases/download/v2.6/spams-2.4-cp27-none-win_amd64.whl
pip install git+https://github.com/daducci/AMICO.git

	<!DOCTYPE html>
	<html>
	<style>
	body {
	font-family: Helvetica Neue, Arial, sans-serif;
	text-align: center;
	}
	.wrapper {
	max-width: 800px;
	margin: 50px auto;

	#! /bin/bash

	set -e

	g++ -o test_offscreen.o -c test_offscreen.cpp -I$PYTHONHPC/include/vtk-6.0
	g++ -o test_offscreen test_offscreen.o $PYTHONHPC/lib/libvtk*.so
	LD_LIBRARY_PATH=$PYTHONHPC/lib/ ./test_offscreen

	sudo su -
	# go to system root, cd ..
	mkdir /opt/anaconda3
	# installed anaconda to /opt/anaconda3
	bash /Temp/Anaconda3-5.1.0-Linux-x86_64.sh
	# create py 3.6
	/opt/anaconda3/bin/conda create -p /opt/envs/conda/py36 python=3.6
	# activate py 3.6
	source /opt/anaconda3/bin/activate /opt/envs/conda/py36
	# install prebuilt vtk for offscreen rendering

	#!/usr/bin/env python
	import os
	os.environ['CUDA_VISIBLE_DEVICES'] = ''

	import pandas as pd
	import numpy as np
	from keras import optimizers
	from keras.utils import to_categorical
	from keras.models import Model
	from keras.layers import Input, Dense