pansapiens

#!/usr/bin/env python
"""
Given a list of video files, creates a tiled output video with each 
input video playing simulutaneously with mixed audio.
The result is something like a composite security camera feed, or the 
"Brady Bunch" opening credits.

DISCLAIMER: The author holds no responsibility for your actions if you 
become criminally insane from watching all nine Puppet Master films 
simultaneously. You have been warned.

pansapiens

#!/usr/bin/env python
import sys
import os
import argparse
import pandas as pd
import gffutils


def create_featuredb(gtf_file, output_file=':memory:'):
    """

pansapiens

#!/usr/bin/env bash
UBUNTU_RELEASE=$(lsb_release --codename --short)
export COMPOSE_VERSION=1.8.0

# Ask for the user password
# Script only works if sudo caches the password for a few minutes
sudo true

sudo apt-get update
sudo apt-get install python-pip apt-transport-https ca-certificates

pansapiens

# This version accepts any number of dictionaries
# http://stackoverflow.com/a/26853961
def merge_dicts(*dict_args):
    """
    Given any number of dicts, shallow copy and merge into a new dict,
    precedence goes to key value pairs in latter dicts.
    """
    result = {}
    for dictionary in dict_args:
        result.update(dictionary)

pansapiens

#!/usr/bin/env python
"""
Takes a list of CloudStor download page links and turns them
into direct download links, suitable for use with wget -i or
aria2 -i.

$ convert_cloudstor_links.py page_links.txt >direct_links.txt
$ wget --content-disposition -c -i direct_links.txt
"""
import sys

pansapiens

pansapiens

# Tools:
# sf-convert: http://sw-tools.pdb.org/apps/SF-CONVERT/doc/V1-0-00/documentation.html
# Coot
# CCP4
# Pymol

# Get mmCIF format structure factors, and PDB coordinates
wget http://www.rcsb.org/pdb/files/r4J1Ysf.ent.gz
wget http://www.rcsb.org/pdb/files/4J1Y.pdb.gz
gunzip r4J1Ysf.ent.gz 4J1Y.pdb.gz

pansapiens

#!/usr/bin/env python
# A simple script to suck up HTML, convert any images to inline Base64
# encoded format and write out the converted file.
#
# Usage: python standalone_html.py <input_file.html> <output_file.html>
#
# TODO: Consider MHTML format: https://en.wikipedia.org/wiki/MHTML

import os
from bs4 import BeautifulSoup

pansapiens

while true; do if host www.example.com | grep "192.168.0.1"; then sleep 3600; else printf "\a"; xmessage -center "Domain propagated"; fi done

pansapiens

javascript:(function(){var%20url_regex=/(https?:\/\/(?:[-\w\.]+)+(?::\d+)?)((?:\/([\w/_\-\.]*(\?\S+)?)?)?)/,url_results=url_regex.exec(document.location),new_url%20=%20url_results[1]+".proxy.com"+url_results[2];window.location=new_url;})()