patchdynamics’s gists

patchdynamics / GeoTiff to MPEG

Last active December 5, 2016 06:56

Stuff for making a movie out of a sequence of GeoTIFFs


	# need to rescale the values
	gdal_translate -scale 200 350 0 1 air.59.tif air-rescaled.tif

	# or batch it
	find *.tif -exec gdal_translate -scale 200 350 0 1 {} {}.rescaled.tif \;

	# make into png files
	mogrify -format jpg *.rescaled.tif

patchdynamics / Batch Reproject using GDAL

Created July 28, 2015 18:37

find *_polygon.shp -exec ogr2ogr -s_srs EPSG:5070 -t_srs EPSG:102009 ../nasqan_polygons_lambert/{} {} \;

patchdynamics / Batch Convert Shape to Raster

Last active August 29, 2015 14:26

Batch convert shape to raster user GDAL

	find *.shp -exec gdal_rasterize -burn 1 -tr 200 200 {} ../nasqan_raster_lambert/{}.tif \;

	# improve performance by loading more data into memory at once
	find *.shp -exec gdal_rasterize --config GDAL_CACHEMAX 2400 -burn 1 -tr 30 30 -a_srs EPSG:5070 -of HFA {} ../nasqan_raster_conus/{}30.img \;

	# compress tiffs using LZW to vasty improve disk performance
	find *.shp -exec gdal_rasterize --config GDAL_CACHEMAX 4000 -burn 1 -tr 30 30 -a_srs EPSG:5070 -co COMPRESS=LZW {} ../nasqan_raster_conus/{}30.tiff \;

patchdynamics / NARR NetCDF to GeoTIFF

Last active August 29, 2015 14:26

NARR NetCDF to GeoTIFF

	require(ncdf)
	require(raster)

	file.nc <- 'air.sfc.2009.nc'

	## Output: a GeoTIFF file
	file.tiff <- paste('air/air.', sprintf('%.4d',day), '.tiff', sep ='')

	r.temperature <- raster(file.nc, day)

patchdynamics / crop_highres.sh

Last active August 29, 2015 14:27

Crop high def raster to polygon efficiently

	# tried with gdalwarp, but ends up slow with a huge file
	gdalwarp -q -cutline /Users/matthewxi/Documents/Projects/NASQAN/clip_columbia_extent_conus.shp -crop_to_cutline -co COMPRESS=LZW -of GTiff /Users/matthewxi/Documents/Projects/NASQAN/nasqan_raster_conus_compressed/b14246900_polygon.shp30.tiff /Users/matthewxi/Documents/Projects/NASQAN/b14246900_nlcd_clipped_3.tif

	# gdal_translate seems to be the better option
	# using extents to crop
	gdal_translate -projwin -2191346 3275471 -1068667 2168385 -co "COMPRESS=LZW" /Users/matthewxi/Documents/Projects/NASQAN/nasqan_raster_conus_compressed/b14246900_polygon.shp30.tiff /Users/matthewxi/Documents/Projects/NASQAN/b14246900_nlcd_clipped_7.tif

patchdynamics / download_precip.sh

Created August 20, 2015 21:46

Download files using python, in this case precipitation gis files

	#!/home/deepwinter/env/bin/python
	# using virtual env
	# http://wiki.dreamhost.com/Python
	import datetime
	import time
	import wget
	import datetime
	import tarfile
	import os.path
	import urlgrabber

patchdynamics / hrap_projection.prj

Last active August 29, 2015 14:27

Reproject and rasterize HRAP precipitation

	+proj=stere +lat_0=90 +lat_ts=60 +lon_0=-105 +k=1 +x_0=0 +y_0=0
	+a=6371200 +b=6371200 +to_meter=4762.5 +no_defs
	["Degree",0.0174532925199433]],PROJECTION["Stereographic_North_Pole"],
	PARAMETER["False_Easting",0.0],PARAMETER["False_Northing",0.0],
	PARAMETER["Central_Meridian",-105.0],PARAMETER["Standard_Parallel_1",
	60.0],UNIT["HRAP_Grid",4762.5]]

patchdynamics / rasterize_ct_river_hrap_above_haddam.sh

Created August 24, 2015 20:04

Rasterize CT River Watershed Haddam to HRAP Coordinate Grid

 gdal_rasterize --config GDAL_CACHEMAX 4000  -burn 1 -tr 1.0 1.0 -te 562 -952 602 -853 -co COMPRESS=LZW  CT_Watershed_Above_Haddam_HRAP_Projected.shp CT_Watershed_Above_Haddam_HRAP_Projected.tiff

patchdynamics / USA_Contiguous_Albers_Equal_Area_Conic_USGS_version.prj

Created August 26, 2015 21:54

Proj4 string for USA_Contiguous_Albers_Equal_Area_Conic_USGS_version, copied from http://geeohspatial.blogspot.com/2013/03/custom-srss-in-postgis-and-qgis.html

+proj=aea +lat_1=29.5 +lat_2=45.5 +lat_0=23 +lon_0=-96 +x_0=0 +y_0=0 +ellps=GRS80 +datum=NAD83 +units=m +no_defs

patchdynamics / NCDO_PDSI_CT_River.vim

Last active August 27, 2015 21:01

Processing NCDC PDSI data for CT River Macrosystem

	# VIM regex commands

	# Get ride of anything not from 2010 - 2015
	g!/\(.*\)\(201[0-5]\) /d

	# Get ride of all areas not relevant to our study area
	g!/^0601\\|^0602\\|^1901\\|^1902\\|^2701\\|^2702\\|^4301\\|^4302\\|^4303/d

	# Split region code from year, get ride of variable code
	%s/\(.*\)05\(201[0-5]\) /\1 \2/g

House of Salt Marsh patchdynamics