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import akka.actor._ | |
import akka.actor.ActorLogging | |
import akka.actor.ActorSystem | |
import akka.stream._ | |
import akka.stream.actor.ActorSubscriberMessage._ | |
import akka.stream.actor._ | |
import akka.stream.scaladsl._ | |
import akka.{ NotUsed, Done } | |
import scala.io.Source |
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//inspired by http://www.michaelpollmeier.com/2018/12/10/checksum-files-scala | |
import java.io.File | |
import java.nio.file.Files | |
import java.security.{DigestInputStream, MessageDigest} | |
import scala.collection.JavaConverters._ | |
def md5(roots: File*): String = { | |
val md = MessageDigest.getInstance("MD5") | |
roots.foreach { root => |
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import javax.crypto._ | |
import javax.crypto.spec._ | |
import java.util.Base64 | |
val message= "Hello" | |
val secret = "eGkmaYd3PE9x3Z221x7b2nXmJ7ACGrjf" | |
val ivString = "0123456789012345" | |
val ciper: Cipher = Cipher.getInstance("AES/CBC/PKCS5Padding") |
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#!/bin/bash | |
set -e | |
set +u | |
get_script_dir () { | |
SOURCE="${BASH_SOURCE[0]}" | |
# While $SOURCE is a symlink, resolve it | |
while [ -h "$SOURCE" ]; do | |
DIR="$( cd -P "$( dirname "$SOURCE" )" && pwd )" | |
SOURCE="$( readlink "$SOURCE" )" |
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import akka.actor._ | |
import akka.actor.ActorLogging | |
import akka.actor.ActorSystem | |
import akka.stream._ | |
import akka.stream.actor.ActorSubscriberMessage._ | |
import akka.stream.actor._ | |
import akka.stream.scaladsl._ | |
import akka.{ NotUsed, Done } | |
import akka.util.ByteString | |
import java.io._ |
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# http://www.sequentix.de/gelquest/help/distance_measures.htm | |
bdist <- function( x, y , method ){ | |
a <- sum( x == 1 & y == 1) | |
b <- sum( x == 1 & y == 0) | |
c <- sum( x == 0 & y == 1) | |
d <- sum( x == 0 & y == 0) | |
switch(method, | |
tanimoto = (a+d)/(a+2*(b+c)+d), |
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/* | |
build.sbt | |
name := "AkkaStreamTemplate" | |
version := "0.1-SNAPSHOT" | |
scalaVersion := "2.12.2" | |
libraryDependencies ++= { | |
Seq( |
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import java.io.File | |
import org.rocksdb._ | |
import org.rocksdb.util.SizeUnit | |
import scala.collection.JavaConversions._ | |
// build.sbt | |
// name := "RocksDB" | |
// version := "0.1" | |
// scalaVersion := "2.12.0" | |
// libraryDependencies += "org.rocksdb" % "rocksdbjni" % "5.0.1" |
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# loop over symbolik links in current directory | |
for f in `find . -maxdepth 1 -type l ` ; do | |
# get symlink destination | |
g=` readlink $f ` | |
# move original to directory | |
cp -f $g . | |
# clean | |
if [ $? == 0 ]; then | |
rm -f $g | |
rm -f $f |
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library(Rqc) | |
fs <- "corrupted.fastq" | |
qa <- rqcQA(fs,sample=F) | |
sessionInfo() |
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