Test report for https://github.com/easybuilders/easybuild-easyconfigs/pull/10888 #### Test result Build succeeded for 0 out of 1 (1 easyconfigs in this PR) #### Overview of tested easyconfigs (in order) * **FAIL (build issue)** _seqtk-1.3-GCC-9.3.0.eb_ (partial log available at https://gist.github.com/e071ed5d68cd85fda6237b13aa4029f3) #### Time info * start: Tue, 30 Jun 2020 18:01:48 +0000 (UTC) * end: Tue, 30 Jun 2020 18:02:01 +0000 (UTC) #### EasyBuild info * easybuild-framework version: 4.2.1 * easybuild-easyblocks version: 4.2.1 * command line: ``` eb --configfiles=/users/pescobar/easybuild-cfgs/test.cfg --github-user=pescobar --from-pr=10888 --upload-test-report ``` * full configuration (includes defaults): ``` --allow-loaded-modules='EasyBuild' --buildpath='/tmp/pescobar/eb-build' --check-ebroot-env-vars='warn' --cleanup-builddir --cleanup-easyconfigs --cleanup-tmpdir --color='auto' --configfiles='/users/pescobar/easybuild-cfgs/test.cfg' --container-type='singularity' --containerpath='/users/pescobar/.local/easybuild/containers' --default-opt-level='defaultopt' --detect-loaded-modules='warn' --disable-add-dummy-to-minimal-toolchains --disable-add-system-to-minimal-toolchains --disable-allow-modules-tool-mismatch --disable-allow-use-as-root-and-accept-consequences --disable-avail-cfgfile-constants --disable-avail-easyconfig-constants --disable-avail-easyconfig-licenses --disable-avail-easyconfig-params --disable-avail-easyconfig-templates --disable-avail-hooks --disable-avail-module-naming-schemes --disable-avail-modules-tools --disable-avail-repositories --disable-check-conflicts --disable-check-contrib --disable-check-github --disable-check-style --disable-consider-archived-easyconfigs --disable-container-build-image --disable-containerize --disable-copy-ec --disable-debug --disable-debug-lmod --disable-devel --disable-dry-run --disable-dry-run-short --disable-dump-autopep8 --disable-dump-env-script --disable-enforce-checksums --disable-experimental --disable-extended-dry-run --disable-fetch --disable-fix-deprecated-easyconfigs --disable-force --disable-group-writable-installdir --disable-hidden --disable-ignore-checksums --disable-ignore-index --disable-ignore-locks --disable-ignore-osdeps --disable-info --disable-install-github-token --disable-install-latest-eb-release --disable-job --disable-last-log --disable-list-toolchains --disable-logtostdout --disable-minimal-toolchains --disable-missing-modules --disable-module-depends-on --disable-module-extensions --disable-module-only --disable-new-branch-github --disable-new-pr --disable-package --disable-pretend --disable-preview-pr --disable-quiet --disable-read-only-installdir --disable-rebuild --disable-recursive-module-unload --disable-regtest --disable-remove-ghost-install-dirs --disable-rpath --disable-sequential --disable-set-default-module --disable-set-gid-bit --disable-show-config --disable-show-default-configfiles --disable-show-default-moduleclasses --disable-show-ec --disable-show-full-config --disable-show-system-info --disable-skip --disable-skip-test-cases --disable-sticky-bit --disable-terse --disable-trace --disable-try-update-deps --disable-update-modules-tool-cache --disable-use-existing-modules --disable-verify-easyconfig-filenames --extended-dry-run-ignore-errors --fixed-installdir-naming-scheme --from-pr='10888' --github-user='pescobar' --ignore-dirs='.git,.svn' --include-easyblocks='' --include-module-naming-schemes='' --include-toolchains='' --index-max-age='604800' --installpath='/users/pescobar/.local/easybuild' --job-backend='GC3Pie' --job-max-jobs='0' --job-max-walltime='24' --job-output-dir='/users/pescobar' --job-polling-interval='30.0' --lib64-fallback-sanity-check --local-var-naming-check='warn' --logfile-format='easybuild,easybuild-%(name)s-%(version)s-%(date)s.%(time)s.log' --map-toolchains --max-fail-ratio-adjust-permissions='0.5' --module-naming-scheme='EasyBuildMNS' --module-syntax='Lua' --moduleclasses='base,astro,bio,cae,chem,compiler,data,debugger,devel,geo,ide,lang,lib,math,mpi,numlib,perf,quantum,phys,system,toolchain,tools,vis' --modules-tool-version-check --modules-tool='Lmod' --mpi-tests --output-format='txt' --package-naming-scheme='EasyBuildPNS' --package-release='1' --package-tool-options='' --package-tool='fpm' --package-type='rpm' --packagepath='/users/pescobar/.local/easybuild/packages' --pr-target-account='easybuilders' --pr-target-branch='develop' --pre-create-installdir --repository='FileRepository' --repositorypath='/users/pescobar/.local/easybuild/ebfiles_repo' --robot-paths='' --sourcepath='/shared/maintainers/sources' --strict='warn' --subdir-modules='modules' --subdir-software='software' --suffix-modules-path='all' --tmpdir='/tmp/pescobar/eb-tmp' --upload-test-report --use-ccache='False' --use-f90cache='False' --wait-on-lock-interval='60' --wait-on-lock-limit='0' ```` #### System info * _core count:_ 1 * _cpu arch:_ x86_64 * _cpu arch name:_ UNKNOWN * _cpu model:_ Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz * _cpu speed:_ 3196.298 * _cpu vendor:_ Intel * _gcc version:_ Using built-in specs.; COLLECT_GCC=gcc; COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-redhat-linux/8/lto-wrapper; OFFLOAD_TARGET_NAMES=nvptx-none; OFFLOAD_TARGET_DEFAULT=1; Target: x86_64-redhat-linux; Configured with: ../configure --enable-bootstrap --enable-languages=c,c++,fortran,lto --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-shared --enable-threads=posix --enable-checking=release --enable-multilib --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-linker-build-id --with-gcc-major-version-only --with-linker-hash-style=gnu --enable-plugin --enable-initfini-array --with-isl --disable-libmpx --enable-offload-targets=nvptx-none --without-cuda-driver --enable-gnu-indirect-function --enable-cet --with-tune=generic --with-arch_32=x86-64 --build=x86_64-redhat-linux; Thread model: posix; gcc version 8.3.1 20191121 (Red Hat 8.3.1-5) (GCC) ; * _glibc version:_ 2.28 * _hostname:_ generoso-c1-s-1 * _os name:_ centos linux * _os type:_ Linux * _os version:_ 8.2.2004 * _platform name:_ x86_64-unknown-linux * _python version:_ 3.6.8 (default, Apr 16 2020, 01:36:27) ; [GCC 8.3.1 20191121 (Red Hat 8.3.1-5)] * _system gcc path:_ /usr/bin/gcc * _system python path:_ /users/pescobar/.virtualenvs/eb-4.2.1/bin/python * _total memory:_ 15876 #### List of loaded modules * (none) #### Environment ``` BASH_ENV = /apps/modules/lmod/lmod/init/bash BASH_FUNC_ml%% = () { eval $($LMOD_DIR/ml_cmd "$@") } BASH_FUNC_module%% = () { eval $($LMOD_CMD bash "$@") && eval $(${LMOD_SETTARG_CMD:-:} -s sh) } CPATH = /apps/slurm/default/include:/apps/modules/lua/5.3.5/include:/opt/git/include:/apps/slurm/default/include:/opt/openldap-2.4.49/include:/apps/modules/lua/5.3.5/include:/opt/git/include:/apps/slurm/default/include:/opt/openldap-2.4.49/include:/apps/modules/lua/5.3.5/include:/opt/git/include DBUS_SESSION_BUS_ADDRESS = unix:path=/run/user/5009/bus EB_SCRIPT_PATH = /users/pescobar/.virtualenvs/eb-4.2.1/bin/eb EDITOR = vim FANCYLOGGER_IGNORE_MPI4PY = 1 FPATH = /apps/modules/lmod/lmod/init/ksh_funcs GCC_COLORS = error=01;31:warning=01;35:note=01;36:caret=01;32:locus=01:quote=01 HISTCONTROL = ignoredups HISTFILESIZE = 100000000 HISTSIZE = 1000000 HISTTIMEFORMAT = %F %T HOME = /users/pescobar HOSTNAME = generoso-c1-s-1 LANG = en_US.UTF-8 LC_ADDRESS = es_ES.UTF-8 LC_IDENTIFICATION = es_ES.UTF-8 LC_MEASUREMENT = es_ES.UTF-8 LC_MONETARY = es_ES.UTF-8 LC_NAME = es_ES.UTF-8 LC_NUMERIC = es_ES.UTF-8 LC_PAPER = es_ES.UTF-8 LC_TELEPHONE = es_ES.UTF-8 LD_LIBRARY_PATH = /apps/slurm/default/lib:/opt/git/lib/lib:/apps/slurm/default/lib:/opt/openldap-2.4.49/lib/lib:/opt/git/lib/lib:/apps/slurm/default/lib:/opt/openldap-2.4.49/lib/lib:/opt/git/lib LESSOPEN = ||/usr/bin/lesspipe.sh %s LIBRARY_PATH = /apps/slurm/default/lib:/opt/git/lib:/apps/slurm/default/lib:/opt/openldap-2.4.49/lib:/opt/git/lib:/apps/slurm/default/lib:/opt/openldap-2.4.49/lib:/opt/git/lib LMOD_CMD = /apps/modules/lmod/lmod/libexec/lmod LMOD_DIR = /apps/modules/lmod/lmod/libexec LMOD_PKG = /apps/modules/lmod/lmod LMOD_ROOT = /apps/modules/lmod LMOD_SETTARG_FULL_SUPPORT = no LMOD_VERSION = 8.3.13 LMOD_sys = Linux LOGNAME = pescobar LS_COLORS = rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=00:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=00;36:*.au=00;36:*.flac=00;36:*.m4a=00;36:*.mid=00;36:*.midi=00;36:*.mka=00;36:*.mp3=00;36:*.mpc=00;36:*.ogg=00;36:*.ra=00;36:*.wav=00;36:*.oga=00;36:*.opus=00;36:*.spx=00;36:*.xspf=00;36: LUAROCKS_PREFIX = /apps/modules/lua/luarocks/3.2.1 LUA_CPATH = /apps/modules/lua/5.3.5/lib/lua/5.3/?.so;/apps/modules/lua/luarocks/3.2.1/lib/lua/5.3/?.so;; LUA_PATH = /apps/modules/lua/5.3.5/share/lua/5.3/?.lua;/apps/modules/lua/5.3.5/share/lua/5.3/?/init.lua;/apps/modules/lua/luarocks/3.2.1/share/lua/5.3/?.lua;/apps/modules/lua/luarocks/3.2.1/share/lua/5.3/?/init.lua;; MAIL = /var/spool/mail/pescobar MANPATH = /apps/slurm/default/share/man:/opt/git/share/man:/apps/slurm/default/share/man:/opt/openldap-2.4.49/share/man:/opt/git/share/man:/apps/slurm/default/share/man:/opt/openldap-2.4.49/share/man:/apps/modules/lmod/lmod/share/man:/opt/git/share/man MODULEPATH = /apps/modules/modulefiles/Linux:/apps/modules/modulefiles/Core:/apps/modules/lmod/lmod/modulefiles/Core MODULEPATH_ROOT = /apps/modules/modulefiles MODULESHOME = /apps/modules/lmod/lmod PATH = /users/pescobar/.virtualenvs/eb-4.2.1/bin:/users/pescobar/bin:/users/pescobar/.local/bin:/apps/slurm/default/bin:/apps/modules/lua/luarocks/3.2.1/bin:/apps/modules/lua/5.3.5/bin:/opt/git/bin:/users/pescobar/.virtualenvs/eb-4.2.1/bin:/users/pescobar/bin:/users/pescobar/.local/bin:/apps/slurm/default/bin:/opt/openldap-2.4.49/bin:/opt/openldap-2.4.49/sbin:/opt/openldap-2.4.49/libexec:/apps/modules/lua/luarocks/3.2.1/bin:/apps/modules/lua/5.3.5/bin:/opt/git/bin:/users/pescobar/bin:/users/pescobar/.local/bin:/apps/slurm/default/bin:/opt/openldap-2.4.49/bin:/opt/openldap-2.4.49/sbin:/opt/openldap-2.4.49/libexec:/apps/modules/lua/luarocks/3.2.1/bin:/apps/modules/lua/5.3.5/bin:/opt/git/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin PMI_FD = 13 PMI_JOBID = 1269.0 PMI_RANK = 0 PMI_SIZE = 1 PROMPT_COMMAND = printf "\033]0;%s@%s:%s\007" "${USER}" "${HOSTNAME%%.*}" "${PWD/#$HOME/\~}" history -a; history -c; history -r history -a; history -c; history -r history -a; history -c; history -r history -a; history -c; history -r PWD = /users/pescobar PYTHONOPTIMIZE = 1 SELINUX_LEVEL_REQUESTED = SELINUX_ROLE_REQUESTED = SELINUX_USE_CURRENT_RANGE = SHELL = /bin/bash SHLVL = 4 SINFO_FORMAT = %9P %5a %8s %.10l %.6c %.6z %.7D %10T %N SLURMD_NODENAME = generoso-c1-s-1 SLURM_CLUSTER_NAME = generoso SLURM_CONF = /apps/slurm/20-02-1-1/etc/slurm.conf SLURM_CPUS_ON_NODE = 1 SLURM_CPU_BIND = quiet,mask_cpu:0x1 SLURM_CPU_BIND_LIST = 0x1 SLURM_CPU_BIND_TYPE = mask_cpu: SLURM_CPU_BIND_VERBOSE = quiet SLURM_GTIDS = 0 SLURM_JOBID = 1269 SLURM_JOB_CPUS_PER_NODE = 1 SLURM_JOB_GID = 5010 SLURM_JOB_ID = 1269 SLURM_JOB_NAME = bash SLURM_JOB_NODELIST = generoso-c1-s-1 SLURM_JOB_NUM_NODES = 1 SLURM_JOB_PARTITION = normal SLURM_JOB_UID = 5009 SLURM_JOB_USER = pescobar SLURM_LAUNCH_NODE_IPADDR = 10.1.0.13 SLURM_LOCALID = 0 SLURM_MPI_TYPE = pmi2 SLURM_NNODES = 1 SLURM_NODEID = 0 SLURM_NODELIST = generoso-c1-s-1 SLURM_NPROCS = 1 SLURM_NTASKS = 1 SLURM_PRIO_PROCESS = 0 SLURM_PROCID = 0 SLURM_PTY_PORT = 44853 SLURM_PTY_WIN_COL = 231 SLURM_PTY_WIN_ROW = 54 SLURM_SRUN_COMM_HOST = 10.1.0.13 SLURM_SRUN_COMM_PORT = 41345 SLURM_STEPID = 0 SLURM_STEP_ID = 0 SLURM_STEP_LAUNCHER_PORT = 41345 SLURM_STEP_NODELIST = generoso-c1-s-1 SLURM_STEP_NUM_NODES = 1 SLURM_STEP_NUM_TASKS = 1 SLURM_STEP_TASKS_PER_NODE = 1 SLURM_SUBMIT_DIR = /users/pescobar SLURM_SUBMIT_HOST = generoso SLURM_TASKS_PER_NODE = 1 SLURM_TASK_PID = 92091 SLURM_TIME_FORMAT = relative SLURM_TOPOLOGY_ADDR = generoso-c1-s-1 SLURM_TOPOLOGY_ADDR_PATTERN = node SLURM_UMASK = 0002 SLURM_WORKING_CLUSTER = generoso:generoso:6817:8960:101 SQUEUE_FORMAT = %.8i %.8u %.50j %.3t %9r %10S %.10M %.10L %.5D %.4C SRUN_DEBUG = 3 SSH_AGENT_PID = 435616 SSH_AUTH_SOCK = /tmp/ssh-BS1AHRafFJl0/agent.435615 SSH_CLIENT = 131.152.84.49 55048 22 SSH_CONNECTION = 131.152.84.49 55048 10.1.0.13 22 SSH_TTY = /dev/pts/0 TERM = screen-256color TMPDIR = /tmp TMUX = /tmp/tmux-5009/default,435538,0 TMUX_PANE = %0 TMUX_VERSION = 2.7 USER = pescobar VIRTUALENVWRAPPER_HOOK_DIR = /users/pescobar/.virtualenvs VIRTUALENVWRAPPER_PROJECT_FILENAME = .project VIRTUALENVWRAPPER_SCRIPT = /users/pescobar/.local/bin/virtualenvwrapper.sh VIRTUALENVWRAPPER_WORKON_CD = 1 VIRTUAL_ENV = /users/pescobar/.virtualenvs/eb-4.2.1 WORKON_HOME = /users/pescobar/.virtualenvs XDG_RUNTIME_DIR = /run/user/5009 XDG_SESSION_ID = 112 _ = /users/pescobar/.virtualenvs/eb-4.2.1/bin/python __LMOD_SET_FPATH = 1 ```