peterk87

#!/bin/bash

# Function to handle Ctrl+C
handle_interrupt() {
    echo -e "\n\033[1;31mERROR:\033[1m Script interrupted by user (Ctrl+C)\033[0m"
    exit 1
}

# Set up the trap to catch SIGINT (Ctrl+C)
trap handle_interrupt SIGINT

peterk87

#!/bin/bash

set -euo pipefail

error_handler() {
    echo -e "\n\033[1;31mError on line $1\033[0m"
    # Perform any cleanup or logging here
}

handle_interrupt() {

peterk87

#!/bin/bash

set -euo pipefail

SAMPLESHEET="samplesheet.csv"
OUTPUT_DIR="results"
ZIP_PACKAGE_DIR="$(date -I)-nf-flu-results"
VERBOSE=false
OVERWRITE=false