philipp-baumann

snv_impl_base <- function(X) {
  X <- as.matrix(X)
  X <- sweep(X, 1L, rowMeans(X, na.rm = TRUE), `-`)
  X_sc <- sweep(X, 1L, apply(X, 1L, sd, na.rm = TRUE), `/`)
  return(X_sc)
}

snv_impl_base_mstats <- function(X) {
  X <- as.matrix(X)
  X <- sweep(X, 1L, matrixStats::rowMeans2(X, na.rm = TRUE), `-`)

philipp-baumann

# install_github("b-rodrigues/rix", ref = "71-with-nix")
library("rix")
library("dplyr")
library("data.table")

# fusen::load_flat_functions(flat_file = "dev/build_envs.Rmd")
# fusen::load_flat_functions(flat_file = "dev/get_os.Rmd")


library("rix")

philipp-baumann

# This file was generated by the {rix} R package v0.4.1 on 2024-01-06
# with following call:
# >rix(r_ver = "63143ac2c9186be6d9da6035fa22620018c85932",
#  > r_pkgs = c("dplyr",
#  > "data.table"),
#  > overwrite = TRUE)
# It uses nixpkgs' revision 63143ac2c9186be6d9da6035fa22620018c85932 for reproducibility purposes
# which will install R version latest
# Report any issues to https://github.com/b-rodrigues/rix
let

philipp-baumann

CMake Warning:
  Manually-specified variables were not used by the project:

    BUILD_TESTING
    CMAKE_EXPORT_NO_PACKAGE_REGISTRY
    CMAKE_POLICY_DEFAULT_CMP0025
    QT_QMAKE_EXECUTABLE


-- Build files have been written to: /tmp/nix-build-RStudio-2023.09.0+463.drv-1/source/build

philipp-baumann

if (!require("rix")) {
  if (!require("remotes") install.packages("remotes")
  remotes::install_github("b-rodrigues/rix")
}

library("rix")
# make sure that only nix library paths in /nix/... are used to load R packages
rix_init()
# define `default.nix` in reproducible manner (will ping nixpkgs revision on GitHub)
rix(