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# quick socket5 proxy
# set socket5 proxy to $SERVER:$PORT at the browser
ssh -D $PORT -f -C -q -N $SERVER

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#USAGE: split_multi_fasta.sh *.fasta
cat $1 | awk -F'>' '/^>/ {match($2,/^(\S+)/,a); FN=a[1]".fa"; print > FN;next;} {print >> FN; close(FN)}'

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#!/bin/bash
# Backup a single volume from a Docker container to a tar archive.

CONTAINER_NAME=$1
VOLUME_NAME=$2
BACKUPTAR=$3

usage() {
  echo "Usage: $0 [container name] [volume name] ([backup.tar])"
  exit 1

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#!/bin/bash
# Restore a single volume from a tar archive to a Docker container
NEW_CONTAINER_NAME=$1
BACKUPTAR=$2

usage() {
  echo "Usage: $0 [container name] ([backup.tar])"
  exit 1
}

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# ExFAT support on CentOS7
yum install -y http://li.nux.ro/download/nux/dextop/el7/x86_64/nux-dextop-release-0-1.el7.nux.noarch.rpm
yum install exfat-utils fuse-exfat

# mount disk
# $sudo fdisk -l
# $sudo mount /dev/sda1 /media/

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# Install and Docker on CentOS 7
# Reference:
# https://www.digitalocean.com/community/tutorials/how-to-install-and-use-docker-on-centos-7

sudo yum check-update
# It will add the official Docker repository, download the latest version of Docker, and install it:
curl -fsSL https://get.docker.com/ | sh

# start the Docker daemon
sudo systemctl start docker

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#!/bin/sh
awk 'NR%4==1 {print substr($1,2)}'

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#!/bin/sh
awk '$0~/^>/{print $0;next}; {gsub("U","T");print $0}'

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#!/usr/bin/env perl

$string=$ARGV[0];
$cnt=0;
$found=1;

while(<STDIN>){
	if( $cnt%4==0){
		if( /$string/i ){
			$found=1;

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 awk -F ' ' '{ if(/^>/){F=sprintf("%s.fasta", substr($1,2)); print > F;next;} else {print >> F}}'