raffdoc / gitbook.R

Created April 20, 2014 14:15 — forked from jbryer/gitbook.R

	require(knitr)

	#' Initializes a new Gitbook.
	#'
	#' This will initalize a new Gitbook in the given directory. When done, it will
	#' also change the working directory.
	#'
	#' @author Jason Bryer <[email protected]>
	newGitbook <- function(dir) {
	# TODO: May want to make these parameters or options

raffdoc / 000-instructions.md

Created June 19, 2012 20:12 — forked from halpo/000-instructions.md

harvestr R users conference presentation.

Building a beamer presentation with knitr.

Introduction

The documents included are the input for knitr. In addition you need to have the tool pandoc installed. I also use a custom beamer template to add the University of Utah \institute command to the template. It also changes the indentation some.

Steps

knit document with

raffdoc / instant_pkgs.R

Created June 19, 2012 19:35

Wrapper for package installation and loading

	# Script name: instant_pkgs.R
	# Purpose: Package installation and loading
	# Author: Kay Cichini
	# Date: 2012-06-19
	# Licence: cc by-nc-sa

	instant_pkgs <- function(pkgs) {
	pkgs_miss <- pkgs[which(!pkgs %in% installed.packages()[, 1])]
	if (length(pkgs_miss) > 0) {
	install.packages(pkgs_miss)

raffdoc / knitr Performance Report 4.rnw

Created June 9, 2012 04:25 — forked from timelyportfolio/knitr Performance Report 4.rnw

	\documentclass[nohyper,justified]{tufte-handout}
	%\documentclass{article}
	%great guides at epslatex.pdf
	%check miniplot for potential use

	%\usepackage{graphics}
	%\usepackage{caption}
	%\usepackage{sidecap}
	%\usepackage{textpos}
	%\usepackage[section]{placeins}

raffdoc / Cambridge_R_googleVis_with_knitr_and_RStudio_May_2012.Rmd

Created May 29, 2012 19:54 — forked from mages/Cambridge_R_googleVis_with_knitr_and_RStudio_May_2012.Rmd

Cambridge R user meeting, May 2012

	Interactive charts and slides with R, googleVis and knitr
	========================================
	```{r results='asis', echo=FALSE, message=FALSE, tidy=FALSE}
	library(googleVis)
	G <- gvisGeoChart(Exports, "Country", "Profit",
	options=list(width=250, height=120), chartid="c1")

	T <- gvisBarChart(Exports[,1:2], yvar="Profit", xvar="Country",
	options=list(width=250, height=260,
	legend='none'), chartid="c2")

raffdoc / knitr Performance 3 with knitr and dprint.rnw

Created May 24, 2012 20:30 — forked from timelyportfolio/knitr Performance 3 with knitr and dprint.rnw

	\documentclass{article}
	%great guides at epslatex.pdf
	%check miniplot for potential use

	\usepackage{graphics}
	\usepackage{caption}
	%\usepackage{sidecap}
	%\usepackage{textpos}
	\usepackage[section]{placeins}

raffdoc / caschools-analysis.rmd

Created May 19, 2012 08:23 — forked from jeromyanglim/caschools-analysis.rmd

California schools analysis demonstrating use of R Markdown

	`r opts_chunk$set(cache=TRUE)`

	This is a quick set of analyses of the California Test Score dataset. The post was produced using R Markdown in RStudio 0.96. The main purpose of this post is to provide a case study of using R Markdown to prepare a quick reproducible report. It provides examples of using plots, output, in-line R code, and markdown. The post is designed to be read along side the R Markdown source code, which is available as a gist on github.

	<!-- more -->

	### Preliminaries
	* This post builds on my earlier post which provided a guide for [Getting Started with R Markdown, knitr, and RStudio 0.96](jeromyanglim.blogspot.com/2012/05/getting-started-with-r-markdown-knitr.html)
	* The dataset analysed comes from the `AER` package which is an accompaniment to the book [Applied Econometrics with R](http://www.amazon.com/Applied-Econometrics-R-Use/dp/0387773169) written by [Christian Kleiber](http://wwz.unibas.ch/personen/profil/person/kleiber/) and [Achim Zeileis](http://eeecon.uibk.ac.at/~zeileis/

raffdoc / example-r-markdown.rmd

Created May 17, 2012 20:37 — forked from jeromyanglim/example-r-markdown.rmd

Example of using R Markdown

	This post examines the features of [R Markdown](http://www.rstudio.org/docs/authoring/using_markdown)
	using [knitr](http://yihui.name/knitr/) in Rstudio 0.96.
	This combination of tools provides an exciting improvement in usability for
	[reproducible analysis](http://stats.stackexchange.com/a/15006/183).
	Specifically, this post
	(1) discusses getting started with R Markdown and `knitr` in Rstudio 0.96;
	(2) provides a basic example of producing console output and plots using R Markdown;
	(3) highlights several code chunk options such as caching and controlling how input and output is displayed;
	(4) demonstrates use of standard Markdown notation as well as the extended features of formulas and tables; and
	(5) discusses the implications of R Markdown.

raffdoc / Iligan City Population.r

Created May 17, 2012 20:27 — forked from alstat/Iligan City Population.r

	library(ggplot2)
	library(colorRamps)

	IliganCity <- c(104493, 118778, 167358, 226568, 273004, 285061, 308046, 322821)
	CensalYear <- c("1970", "1975", "1980", "1990", "1995", "2000", "2007", "2010")

	qplot(CensalYear, IliganCity, xlab = expression(bold("Censal Year")),
	ylab = expression(bold("Population")), geom = "bar", colour = I("red"),
	fill = IliganCity, stat = "identity", ylim = c(0, 370000)) + theme_bw() +
	opts(

raffdoc / pubmed_pain.r

Created May 16, 2012 17:07 — forked from bobthecat/pubmed_pain.r

pubmed trend for pain

	source('pubmed_trend.r')
	sex.pub <- pubmed_trend(search.str = 'Sex+Characteristics[mh] AND Pain[mh]', year.span=1970:2011)
	analgesic.pub <- pubmed_trend(search.str = 'Sex+Characteristics[mh] AND Analgesics[mh]', year.span=1970:2011)

	source('plot_bar.r')
	library("RColorBrewer")

	pdf(file='sex_pain.pdf', height=8, width=8)
	par(las=1)
	colorfunction = colorRampPalette(brewer.pal(9, "Reds"))

Rafik Margaryan raffdoc

Building a beamer presentation with knitr.

Introduction

Steps