reiaoki

# you need to install Biopython:
# pip install biopython

# Full discussion:
# https://marcobonzanini.wordpress.com/2015/01/12/searching-pubmed-with-python/

from Bio import Entrez

def search(query):
    Entrez.email = '[email protected]'

reiaoki

#serach pubmed with a keywword, write specific information on a CSV file using E Utilities
from Bio import Entrez
import csv

def search(query):
    #provide NCBI your email address
    Entrez.email = '[email protected]'

    #get the list of IDs
    searchHandle = Entrez.esearch(db='pubmed',