Tom Palmer remlapmot
remlapmot
/ update-r-packages-macos
Last active
June 17, 2025 12:58
Update brew packages and R package for x86_64 and aarch64 and Stata on macOS
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| #!/usr/bin/env zsh | |
| # Update Homebrew packages | |
| brew upgrade --greedy | |
| brew cleanup | |
| # uv python install --reinstall 3.13 | |
| uv tool upgrade --all | |
| mas upgrade |
remlapmot
/ install-gmp-from-source-macos.R
Last active
August 12, 2022 08:45
Install gmp R package from source on macOS
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| # Install gmp from source | |
| # | |
| # * brew install gmp # gets latest gmp | |
| # * obtain gmp from here https://mac.r-project.org/libs/ and follow instructions at bottom of page | |
| # For some reason using Sys.setenv() didn't work so copy files from /opt/homebrew/Cellar/gmp/6.2.1_1/ subdirectories | |
| # (include, lib, share) to /usr/local subdirectories | |
| # Sys.setenv(C_INCLUDE_PATH="/opt/homebrew/Cellar/gmp/6.2.1_1/include:/opt/homebrew/Cellar/gmp/6.2.1_1/lib") | |
| install.packages("gmp", type = "source") |
remlapmot
/ install-cairo-from-source-macos.R
Last active
March 18, 2022 17:38
Install Cairo package from source on macOS
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| # install Cairo from source | |
| # see https://www.mail-archive.com/[email protected]/msg06281.html | |
| Sys.setenv(C_INCLUDE_PATH="/opt/X11/include") | |
| install.packages("Cairo", type = "source") |
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| #!/usr/bin/bash | |
| sudo rstudio-server stop |
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| #!/usr/bin/bash | |
| sudo rstudio-server start |
remlapmot
/ rserver.conf
Created
March 17, 2022 10:24
RStudio server configuration file to prevent sign out after 1 or 2hrs inactivity, location on Ubuntu /etc/rstudio
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| # Server Configuration File | |
| auth-timeout-minutes=0 | |
| auth-stay-signed-in-days=100 |
remlapmot
/ force-discard-changes.sh
Last active
February 27, 2022 18:19
Use if discard changes in GitHub Desktop fails
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| git rm --cached -r . | |
| git reset --hard |
remlapmot
/ update_r_win.ps1
Last active
December 15, 2022 20:21
Update R on Windows - launch Powershell terminal as Administrator and assuming R.exe is on the PATH
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| R.exe -e "update.packages(ask = FALSE, repos = 'https://cran.rstudio.com')" |
remlapmot
/ tinytex-pkgs.R
Last active
March 3, 2022 09:16
Install useful CTAN packages to install in TinyTeX
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| update.packages(ask = FALSE) | |
| if (!requireNamespace('markdown', quietly = TRUE)) install.packages('markdown') | |
| # if (!requireNamespace('pdftools')) install.packages('pdftools') | |
| if (!requireNamespace('magick', quietly = TRUE)) install.packages('magick') | |
| if (!requireNamespace('kable', quietly = TRUE)) install.packages('kable') | |
| if (!requireNamespace('tinytex', quietly = TRUE)) install.packages('tinytex') |
remlapmot
/ r-packages
Created
February 10, 2022 17:30
System dependencies and R packages for installing on a fresh Ubuntu installation
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| #!/usr/bin/env bash | |
| sudo apt-get update -y && sudo apt-get --with-new-pkgs upgrade -y | |
| sudo apt-get install -y \ | |
| build-essential \ | |
| libcurl4-openssl-dev \ | |
| libssl-dev \ | |
| libfreetype6-dev \ | |
| libmagick++-dev \ |