Rich Stoner richstoner

Contemporary Python Packaging

This document lays out a set of Python packaging practices. I don't claim they are best practices, but they fit my needs, and might fit yours.

This was written in July 2020, superseding this gist from 2019.

	#!/usr/bin/env bash

	set -e

	VOLUME_PATH=/Volumes/installer
	while getopts ":d:h" opts; do
	case $opts in
	d)
	VOLUME_PATH=$OPTARG
	;;

	"""
	Scrape full sized images from vangoghmuseum.nl
	---- requrires.txt ------------------------------------------------------------
	beautifulsoup4==4.6.0
	bs4==0.0.1
	certifi==2018.4.16
	chardet==3.0.4
	idna==2.7
	Pillow==5.2.0
	python-slugify==1.2.5

	[
	{ "type": "escape", "align": "left" },
	{
	"type": "appleScriptTitledButton",
	"source": {
	"inline":
	"if application \"iTunes\" is running then\rtell application \"iTunes\"\rif player state is playing then\rreturn (get artist of current track) & \" – \" & (get name of current track)\relse\rreturn \"\"\rend if\rend tell\rend if\rreturn \"\"\r"
	},
	"action": "appleScript",
	"actionAppleScript": {

	# Here is the workflow in a nutshell:
	#
	# 1) Annotate cells in your favorite single cell framework or system
	# 2) Perform your favorite dimensionality reduction into 3D.
	# 3) Export annotation and 3D coordinates to .csv.
	# 4) I imported these data into Blender and created the objects using the below ‘retina_3d_umap_blender.py’ script. Some of it is automated, some of it is hard-coded and project specific.
	# - For each age (since cells here are colored by developmental age) I create a new mesh and add each datapoint for a given age to the mesh as a vertex.
	# 5) I then created a single ’sample object’ for each mesh consisting of a UV sphere primitive. Added a material to that to match the color scheme I had selected. These were the ’templates’ to be used and applied to each vertex in the mesh using a particle system
	# 6) Next created a particle system for each age with the params indicated in the python script.
	# 7) Finally I created an empty parent object to group all of the particles so I could track wi