rkrug

## Based on https://github.com/kjhealy/rmd-starter/blob/master/Makefile

## All Rmarkdown files in the working directory
SRC = $(wildcard *.Rmd)

FILES = $(wildcard *_files)

PDFS  = $(SRC:.Rmd=.pdf)
HTML  = $(SRC:.Rmd=.html)
TEX   = $(SRC:.Rmd=.tex)

rkrug

## All Rmarkdown files in the working directory

SRCDIR = source
OUTDIR = docs

RMD = $(wildcard $(SRCDIR)/*.Rmd)

# HTML  = $(RMD:.Rmd=.html)
TMP  = $(RMD:.Rmd=.html)
HTML = ${subst $(SRCDIR),$(OUTDIR),$(TMP)}

rkrug

# Makefile for generating R packages.
# 2011 Andrew Redd
#
# Assumes Makefile is in a folder where package contents are in a subfolder pkg.
# Roxygen uses the roxygen2 package, and will run automatically on check and all.

PKG_VERSION=$(shell grep -i ^version pkg/DESCRIPTION | cut -d : -d \  -f 2)
PKG_NAME=$(shell grep -i ^package pkg/DESCRIPTION | cut -d : -d \  -f 2)

R_FILES := $(wildcard pkg/R/*.R)

rkrug

---
title: "test"
author: "Rainer M Krug"
date: "3/27/2019"
output:
  html_document: default
---

```{r setup, include=FALSE}
knitr::opts_chunk$set(echo = TRUE)

rkrug

PLANTUML_JAR_URL = https://sourceforge.net/projects/plantuml/files/plantuml.jar/download
DIAGRAMS_SRC := $(wildcard diagrams/*.plantuml)
DIAGRAMS_PNG := $(addsuffix .png, $(basename $(DIAGRAMS_SRC)))
DIAGRAMS_SVG := $(addsuffix .svg, $(basename $(DIAGRAMS_SRC)))

# Default target first; build PNGs, probably what we want most of the time
png: plantuml.jar $(DIAGRAMS_PNG)

# SVG are nice-to-have but don't need to build by default
svg: plantuml.jar $(DIAGRAMS_SVG)

rkrug

## R parts based on https://github.com/yihui/knitr/blob/master/Makefile

PKGNAME := $(shell sed -n "s/^Package: *\([^ ]*\)/\1/p" DESCRIPTION)
PKGVERS := $(shell sed -n "s/^Version: *\([^ ]*\)/\1/p" DESCRIPTION)
PKGSRC  := $(shell basename `pwd`)


########### Package  ###########

####

rkrug

---
title: "plantuml test"
author: "Rainer M Krug"
date: "6/17/2020"
output: html_document
---

```{r setup, include=FALSE}
library(plantuml)
knitr::knit_engines$set(

rkrug

## See https://stackoverflow.com/a/11206700/632423

## adjust when different
SUBDIRS := $(wildcard */.)  # e.g. "foo/. bar/."
TARGETS := all build build-cran check clean clean_check clean_readme deps docs drat files # whatever else, but must not contain '/'
##

# foo/.all bar/.all foo/.clean bar/.clean
SUBDIRS_TARGETS := \
	$(foreach t,$(TARGETS),$(addsuffix $t,$(SUBDIRS)))

rkrug

Update Installation

sudo apt-get update
sudo apt-get upgrade

basic tools

rkrug

SHELL = /bin/bash

# run targets pipeline
build:
	Rscript -e "targets::tar_make()"

vis: visualise
visualise:
	Rscript -e "targets::tar_visnetwork()"