rob-p

#!/bin/bash
#
# This is a rather minimal example Argbash potential
# Example taken from http://argbash.readthedocs.io/en/stable/example.html
#
# ARG_OPTIONAL_BOOLEAN([delete-tmp],[],[delete output directory])
# ARG_POSITIONAL_SINGLE([num-threads],[number of threads to run with],[])
# ARG_POSITIONAL_SINGLE([input],[input file list],[])
# ARG_HELP([Test how long it takes to decompress many files in parallel])
# ARGBASH_GO()

rob-p

fn create_record(line: &str) -> Record {
    let finder = memchr::memmem::Finder::new("bc");
    let mut iter = line.split('\t').peekable();
    let name = iter.peek().unwrap().to_string();
    let count = iter
        .filter(|s| finder.find(s[1..4].as_bytes()).is_some())
        .count();
    Record::new(name, count)
}

rob-p

#ifndef STREAMING_QUERY_HPP
#define STREAMING_QUERY_HPP

#include "../external/pthash/external/essentials/include/essentials.hpp"
#include "../include/dictionary.hpp"
#include "../include/query/streaming_query_canonical_parsing.hpp"
#include "../include/util.hpp"
#include <sstream>

namespace piscem {

rob-p