manual.ipynb

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   "cell_type": "code",
   "execution_count": null,
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   "source": [
    "from phy.cluster import klusta"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "The PRM key-value pairs could be put directly here or could also be loaded from a text file."
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
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    "collapsed": true
   },
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   "source": [
    "EXPERIMENT_NAME = 'myexperiment'\n",
    "RAW_DATA_FILES = ['n6mab041109blahblah1.dat', 'n6mab041109blahblah2.dat']\n",
    "PRB_FILE = 'buzsaki32.probe'\n",
    "NCHANNELS = 32\n",
    "SAMPLE_RATE = 20000.\n",
    "NBITS = 16\n",
    "VOLTAGE_GAIN = 10.\n",
    "WAVEFORMS_NSAMPLES = 20\n",
    "NFEATURES_PER_CHANNEL = 3\n",
    "# ..."
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "Run SD2/KK using the parameters given above. We could also have `spikedetekt2()` and `klustakwik()` functions."
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 5,
   "metadata": {
    "collapsed": true
   },
   "outputs": [],
   "source": [
    "klusta()"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "Now we can launch the manual sorting web app."
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {
    "collapsed": true
   },
   "outputs": [],
   "source": [
    "manual_sorting()"
   ]
  }
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