rossmounce’s gists

rossmounce / scirep2011

Created February 8, 2016 12:37

	http://europepmc.org/articles/PMC3201773/bin/srep00090-s1.doc
	http://europepmc.org/articles/PMC3210691/bin/srep00001-s1.pdf
	http://europepmc.org/articles/PMC3210693/bin/srep00003-s1.pdf
	http://europepmc.org/articles/PMC3216493/bin/srep00005-s1.pdf
	http://europepmc.org/articles/PMC3216494/bin/srep00006-s1.pdf
	http://europepmc.org/articles/PMC3216497/bin/srep00009-s1.doc
	http://europepmc.org/articles/PMC3216498/bin/srep00010-s1.pdf
	http://europepmc.org/articles/PMC3216501/bin/srep00013-s1.pdf
	http://europepmc.org/articles/PMC3216503/bin/srep00015-s1.pdf
	http://europepmc.org/articles/PMC3216504/bin/srep00016-s1.mov

rossmounce / 2012partial.txt

Created February 8, 2016 13:23

	http://europepmc.org/articles/PMC3253589/bin/srep00215-s1.doc
	http://europepmc.org/articles/PMC3253854/bin/srep00217-s1.pdf
	http://europepmc.org/articles/PMC3256565/bin/srep00220-s1.pdf
	http://europepmc.org/articles/PMC3257325/bin/srep00222-s1.pdf
	http://europepmc.org/articles/PMC3259129/bin/srep00227-s1.pdf
	http://europepmc.org/articles/PMC3261443/bin/srep00229-s1.doc
	http://europepmc.org/articles/PMC3261631/bin/srep00224-s1.pdf
	http://europepmc.org/articles/PMC3262048/bin/srep00230-s1.pdf
	http://europepmc.org/articles/PMC3262048/bin/srep00230-s2.mov
	http://europepmc.org/articles/PMC3265565/bin/srep00232-s1.pdf

rossmounce / fulltext2015a.txt

Created February 8, 2016 15:01

2015 scirep

	http://europepmc.org/articles/PMC4381620
	http://europepmc.org/articles/PMC4388161
	http://europepmc.org/articles/PMC4389210
	http://europepmc.org/articles/PMC4389211
	http://europepmc.org/articles/PMC4389718
	http://europepmc.org/articles/PMC4389812
	http://europepmc.org/articles/PMC4391318
	http://europepmc.org/articles/PMC4391317
	http://europepmc.org/articles/PMC4392359
	http://europepmc.org/articles/PMC4394192

rossmounce / plosone10k.txt

Created February 8, 2016 17:53

	http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0000016
	http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0000024
	http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0000030
	http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0000034
	http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0000037
	http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0000040
	http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0000053
	http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0000054
	http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0000078
	http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0000081

rossmounce / uniqgenus

Created February 11, 2016 14:34

	Aa
	Abarema
	Abatia
	Abdulmajidia
	Abelia
	Abeliophyllum
	Abelmoschus
	Abies
	Abietinella
	Abildgaardia

rossmounce / failbinoms

Last active February 11, 2016 15:10

836 genera that fail to match

	Abdulmajidia chaniana
	Abdulmajidia maxwelliana
	Abromeitiella brevifolia
	Abromeitiella lorentziana
	Abutilothamnus yaracuyensis
	Acanthopeltis hirsuta
	Acetabularia caliculus
	Acetabularia ryukyuensis
	Achasma triorgyale
	Acmenosperma pringlei

rossmounce / Angiosperm-orders.tre

Last active April 22, 2016 09:25

Angiosperm-orders.tre

(((t37:0.5,(((t64:0.8,t62:0.9):0.9,((t13:0.1,((t36:1,t9:0.1):0.4,(t41:0.4,t31:0.1):0.9):0.2):0.7,t51:0.1):0.001):0.4,((((((t24:0.3,t54:0.2):0.8,t30:0.3):0.9,t32:0.9):0.4,(t63:0.2,t6:0.3):0.9):0.3,(((t45:1,t8:0.4):1,((t48:0.3,t47:0.2):0.8,t17:0.6):0.7):0.9,t39:0.6):0.6):0.6,((t49:0.3,(t14:0.05,t60:0.2):0.5):0.7,((t23:0.3,t12:0.3):0.7,((t56:0.3,t7:0.3):0.2,(t58:0.9,((t43:0.2,t50:0.2):0.7,t4:0.6):0.3):1):0.7):0.4):1):0.6):1):0.1,(((t18:0.3,((t25:0.3,t3:0.7):0.2,t21:0.1):0.2):0.9,((t57:0.1,t10:0.6):0.2,((t46:0.1,t1:0.6):0.07,t34:0.6):0.07):0.004):0.1,(t42:0.8,(((((t15:0.04,t35:0.3):0.9,((t29:0.7,t40:0.02):0.7,(((t53:0.09,t16:0.04):0.01,t2:0.2):0.04,t26:0.5):0.07):0.7):0.4,((t27:0.1,t20:0.08):0.8,(((t22:0.8,t61:0.08):0.1,t59:0.5):0.8,(t33:0.8,t5:0.9):0.9):0.4):0.9):0.5,t19:0.09):0.04,((t28:0.8,(t52:0.3,t44:0.9):0.3):0.9,t38:1):0.3):0.5):0.3):0.4):0.7,t11:0.4);

rossmounce / latlongs.csv

Created May 24, 2016 14:34

Test lat long data for Ropensci question on making reverse geocoding more efficient/speedier

	10.38333	98.85
	12.08	99.02
	13.42306	101.94194
	13.61222	104.04528
	14.28	99.25
	14.43333	101.36667
	14.5	101
	14.5	104
	15.37	100.34
	16.04611	99.23

rossmounce / cmd console

Created December 9, 2016 20:36

	Microsoft Windows [Version 6.3.9600]
	(c) 2013 Microsoft Corporation. All rights reserved.

	C:\Users\jing>npm install --global getpapers
	npm ERR! Windows_NT 6.3.9600
	npm ERR! argv "C:\\Program Files\\nodejs\\node.exe" "C:\\Program Files\\nodejs\\
	node_modules\\npm\\bin\\npm-cli.js" "install" "--global" "getpapers"
	npm ERR! node v6.9.2
	npm ERR! npm v3.10.9
	npm ERR! file C:\Users\jing\AppData\Roaming\npm-cache\supports-color\1.3.1\packa

rossmounce / checking-Wellcome-DOIs.R

Created February 7, 2017 21:55

	#!/usr/bin/env Rscript
	#install.packages("dplyr")
	#install.packages("httr")
	library(dplyr, warn.conflicts=FALSE)
	library(httr)
	uniquedois <- read.csv(file="wellcomeDOIs.txt",header=F,stringsAsFactors = F)
	uniquedois <- as.data.frame(uniquedois)
	vec <- vector("list",length(uniquedois$V1))
	for (doi in (seq(1,length(uniquedois$V1)))){
	vec[doi] <- try(http_status(GET(uniquedois$V1[doi], timeout(6), user_agent("Mozilla/5.0 (compatible; MSIE 9.0; Windows NT 6.0; Trident/5.0; Trident/5.0)")))$message)

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