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| I know I'm doing all types of wrong here: | |
| Source HTML file here: http://mdpi.com/1420-3049/19/4/5150/htm | |
| I want the text for the dc.source: | |
| Molecules 2014, Vol. 19, Pages 5150-5162 | |
| Am using beautiful soup, so probably best to do it in that BUT it should also be regex-able. I can do this in bash no problem! |
rossmounce
/ trythis
Created
February 11, 2014 17:24
Content Negotiation, example of Internal Server Error
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| curl -g --location --header 'Accept: application/x-bibtex' "http://dx.doi.org/10.1651/0278-0372(2005)025[0159:GR]2.0.CO;2" > test.txt | |
| RETURNS | |
| <h1>Internal Server Error</h1> | |
| (I've encountered about 91 DOIs that appear to give this error) |
rossmounce
/ feeds.xml
Last active
February 28, 2023 15:20
My OPML bundle of academic journal RSS feeds related to my interests (phylogenetics, palaeontology), split into 4 different thematic sections.
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| <?xml version="1.0" encoding="UTF-8"?> | |
| <opml version="1.0"> | |
| <head> | |
| <title>Ross's academic journal RSS feed subscriptions</title> | |
| </head> | |
| <body> | |
| <outline text="General Biology Journals" title="General Biology Journals"> | |
| <outline type="rss" text="BioEssays" title="BioEssays" xmlUrl="http://onlinelibrary.wiley.com/rss/journal/10.1002/(ISSN)1521-1878" htmlUrl="http://onlinelibrary.wiley.com/resolve/doi?DOI=10.1002%2F%28ISSN%291521-1878"/> | |
| <outline type="rss" text="Biol J Linn Soc" title="Biol J Linn Soc" xmlUrl="http://onlinelibrary.wiley.com/rss/journal/10.1111/(ISSN)1095-8312" htmlUrl="http://onlinelibrary.wiley.com/resolve/doi?DOI=10.1111%2F%28ISSN%291095-8312"/> |
rossmounce
/ Trees2Trees
Created
August 12, 2013 16:59
A _really_ basic script for doing many-to-many tree2tree distance (RF) comparisons in R, using the phangorn package and the function treedist. I should probably use one of the 'apply' functions here, right?
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| library(phangorn) | |
| #264 REFERENCE trees in phylip format, PAUP numbering hence 2 | |
| ref2 <- read.tree("jackr2.tre") | |
| #264 trees in phylip format to pair-wise compare to the reference trees, TNT numbering hence 1 | |
| tr2 <- read.tree("jack1.tre") | |
| x <- {} | |
| #all reference trees to one comp tree | |
| for (i in 1:length(tr2)) { |
rossmounce
/ grep_references.sh
Last active
December 20, 2015 09:58
A grep command for all the different Reference List headings encountered in just two years worth of Zootaxa articles. Some post-publication standardization needed me thinks!
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| egrep "(^Citations$|Cited Literature$|Literature [cC]ited$|Literatures cited$|Literature Cited\:$|References$|^references$|Refrences$|References [cC]ited$|REFERENCES$|Bibliography$|BIBLIOGRAPHY$|LITERATURE CITED$|LITERATURE cited$|REFERENCES CITED$|References \[not in Zootaxa format\]$|^Reference$|^Literature$|^References \(asterisks|^References \(except original descriptions|Litterature cited$|Literture Cited$)" |
rossmounce
/ CCBYjournals
Created
March 4, 2013 17:02
This is an incomplete list of 'gold' open access journals that use the CC BY licence.
Thanks to Cameron Neylon.
Please add any you know of that I've missed. Hybrid OA journals are not to be listed here.
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| Journal Name ISSN | |
| Abstract and Applied Analysis 10853375 | |
| Acta Crystallographica Section E 16005368 | |
| Acta Electrotechnica et Informatica 13358243 | |
| Acta Linguistica Asiatica 22323317 | |
| Acta Medica Martiniana 13358421 | |
| Acta Societatis Botanicorum Poloniae 16977 | |
| Acta Universitaria 1886266 | |
| Acta Universitatis Palackianae Olomucensis : Gymnica 12121185 | |
| Acta Veterinaria Scandinavica 17510147 |
rossmounce
/ wordles.r
Last active
December 10, 2015 13:58
— forked from sckott/beswordles.r
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| #N.B. On *ubuntu RCurl may not install for you off the bat. If so read: http://www.omegahat.org/RCurl/FAQ.html & sudo apt-get install libcurl4-openssl-dev | |
| install.packages(c("RCurl","twitteR","wordcloud","tm","stringr")) | |
| library(twitteR); library(wordcloud); library(tm); library(stringr); | |
| # Search for #mooc tweets | |
| mooctweets <- searchTwitter("#mooc", n=2000) | |
| length(mooctweets) # ends up with 713 as of 03-Jan-13 at 15:42 London time | |
| # make into a data.frame | |
| mooctweets_df <- twListToDF(mooctweets) |
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