rtirrell

field_naming_convention = lambda do |v|
  if v.name.to_s[0..0] == v.name[0..0].to_s.upcase
    DataMapper::NamingConventions::Field::Underscored(v) 
  else
    v.name.to_s
  end
end

rtirrell

# workaround from
# http://stackoverflow.com/questions/1987386/foreign-key-name-in-datamapper-associations
field_naming_convention = lambda do |v|
  if v.name.to_s[0..0] == v.name.to_s[0..0].upcase
    v.name.to_s
  else
    DataMapper::NamingConventions::Field::Underscored.call(v)
  end
end

rtirrell

INFO = <<HERE
TABLES:
gds
  - key gds
gse
  - key gse

gds_gse
  - key gds
  - int gse

rtirrell

require "dm-core"
require "dm-timestamps"

# Note, a GSE etc could have two of the same field (i.e. Pubmed so check for that
# and make an array instead)

# GDS
#   has 1 GSE
#   has n GDSSubsets
# GDSSubset

rtirrell

require "dm-core"
require "dm-timestamps"

# Note, a GSE etc could have two of the same field (i.e. Pubmed so check for that
# and make an array instead)

# child_key: set of fields identifying child model
# parent_key: set of fields identifying parent model

# GDS

rtirrell

require "dm-core"
require "dm-timestamps"

# Note, a GSE etc could have two of the same field (i.e. Pubmed so check for that
# and make an array instead)

# child_key: set of fields identifying child model
# parent_key: set of fields identifying parent model

# GDS

rtirrell

    class GEO
      def self.inherited(subclass)
        subclass.class_eval do
          include DataMapper::Resource
          def self.default_repository_name; :expr_geo; end
        end
      end
    end
    
    class GDS < GEO

rtirrell

require "dm-core"
require "dm-timestamps"


module GORM
  class GEO
    def self.inherited(subclass)
      subclass.class_eval do
        include DataMapper::Resource
        def self.default_repository_name; :expr_geo; end

rtirrell

~ Unknown column 'gse_gsm.gse_gse' in 'where clause' (code: 1054, sql state: 42S22, query: SELECT `gsm_list`.`gsm` FROM `gsm_list` INNER JOIN `gse_gsm` ON `gsm_list`.`gsm` = `gse_gsm`.`gsm` INNER JOIN `gse_list` ON `gse_gsm`.`gse_gse` = `gse_list`.`gse` WHERE `gse_gsm`.`gse_gse` = 1 GROUP BY `gsm_list`.`gsm` ORDER BY `gsm_list`.`gsm`, uri: mysql://rpt:rpt@bmir-db1.sunet/expr_geo)
DataObjects::SQLError: Unknown column 'gse_gsm.gse_gse' in 'where clause' (code: 1054, sql state: 42S22, query: SELECT `gsm_list`.`gsm` FROM `gsm_list` INNER JOIN `gse_gsm` ON `gsm_list`.`gsm` = `gse_gsm`.`gsm` INNER JOIN `gse_list` ON `gse_gsm`.`gse_gse` = `gse_list`.`gse` WHERE `gse_gsm`.`gse_gse` = 1 GROUP BY `gsm_list`.`gsm` ORDER BY `gsm_list`.`gsm`, uri: mysql://rpt:rpt@bmir-db1.sunet/expr_geo)

rtirrell

require "dm-core"
require "dm-timestamps"

# Note, a GSE etc could have two of the same field (i.e. Pubmed so check for that
# and make an array instead)

# child_key: set of fields identifying child model
# parent_key: set of fields identifying parent model

# GDS