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rutj3/geopandas_bokeh.ipynb

Created November 2, 2017 08:35
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GeoPandas Bokeh example
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geopandas_bokeh.ipynb
{
"cells": [
{
"cell_type": "code",
"execution_count": 1,
"metadata": {},
"outputs": [
{
"data": {
"text/html": [
"\n",
" <div class=\"bk-root\">\n",
" <a href=\"https://bokeh.pydata.org\" target=\"_blank\" class=\"bk-logo bk-logo-small bk-logo-notebook\"></a>\n",
" <span id=\"5cb01db7-6a5f-4b7c-945c-2e7ec9bff37a\">Loading BokehJS ...</span>\n",
" </div>"
]
},
"metadata": {},
"output_type": "display_data"
},
{
"data": {
"application/javascript": [
"\n",
"(function(root) {\n",
" function now() {\n",
" return new Date();\n",
" }\n",
"\n",
" var force = true;\n",
"\n",
" if (typeof (root._bokeh_onload_callbacks) === \"undefined\" || force === true) {\n",
" root._bokeh_onload_callbacks = [];\n",
" root._bokeh_is_loading = undefined;\n",
" }\n",
"\n",
" var JS_MIME_TYPE = 'application/javascript';\n",
" var HTML_MIME_TYPE = 'text/html';\n",
" var EXEC_MIME_TYPE = 'application/vnd.bokehjs_exec.v0+json';\n",
" var CLASS_NAME = 'output_bokeh rendered_html';\n",
"\n",
" /**\n",
" * Render data to the DOM node\n",
" */\n",
" function render(props, node) {\n",
" var script = document.createElement(\"script\");\n",
" node.appendChild(script);\n",
" }\n",
"\n",
" /**\n",
" * Handle when an output is cleared or removed\n",
" */\n",
" function handleClearOutput(event, handle) {\n",
" var cell = handle.cell;\n",
"\n",
" var id = cell.output_area._bokeh_element_id;\n",
" var server_id = cell.output_area._bokeh_server_id;\n",
" // Clean up Bokeh references\n",
" if (id !== undefined) {\n",
" Bokeh.index[id].model.document.clear();\n",
" delete Bokeh.index[id];\n",
" }\n",
"\n",
" if (server_id !== undefined) {\n",
" // Clean up Bokeh references\n",
" var cmd = \"from bokeh.io.state import curstate; print(curstate().uuid_to_server['\" + server_id + \"'].get_sessions()[0].document.roots[0]._id)\";\n",
" cell.notebook.kernel.execute(cmd, {\n",
" iopub: {\n",
" output: function(msg) {\n",
" var element_id = msg.content.text.trim();\n",
" Bokeh.index[element_id].model.document.clear();\n",
" delete Bokeh.index[element_id];\n",
" }\n",
" }\n",
" });\n",
" // Destroy server and session\n",
" var cmd = \"import bokeh.io.notebook as ion; ion.destroy_server('\" + server_id + \"')\";\n",
" cell.notebook.kernel.execute(cmd);\n",
" }\n",
" }\n",
"\n",
" /**\n",
" * Handle when a new output is added\n",
" */\n",
" function handleAddOutput(event, handle) {\n",
" var output_area = handle.output_area;\n",
" var output = handle.output;\n",
"\n",
" // limit handleAddOutput to display_data with EXEC_MIME_TYPE content only\n",
" if ((output.output_type != \"display_data\") || (!output.data.hasOwnProperty(EXEC_MIME_TYPE))) {\n",
" return\n",
" }\n",
"\n",
" var toinsert = output_area.element.find(`.${CLASS_NAME.split(' ')[0]}`);\n",
"\n",
" if (output.metadata[EXEC_MIME_TYPE][\"id\"] !== undefined) {\n",
" toinsert[0].firstChild.textContent = output.data[JS_MIME_TYPE];\n",
" // store reference to embed id on output_area\n",
" output_area._bokeh_element_id = output.metadata[EXEC_MIME_TYPE][\"id\"];\n",
" }\n",
" if (output.metadata[EXEC_MIME_TYPE][\"server_id\"] !== undefined) {\n",
" var bk_div = document.createElement(\"div\");\n",
" bk_div.innerHTML = output.data[HTML_MIME_TYPE];\n",
" var script_attrs = bk_div.children[0].attributes;\n",
" for (var i = 0; i < script_attrs.length; i++) {\n",
" toinsert[0].firstChild.setAttribute(script_attrs[i].name, script_attrs[i].value);\n",
" }\n",
" // store reference to server id on output_area\n",
" output_area._bokeh_server_id = output.metadata[EXEC_MIME_TYPE][\"server_id\"];\n",
" }\n",
" }\n",
"\n",
" function register_renderer(events, OutputArea) {\n",
"\n",
" function append_mime(data, metadata, element) {\n",
" // create a DOM node to render to\n",
" var toinsert = this.create_output_subarea(\n",
" metadata,\n",
" CLASS_NAME,\n",
" EXEC_MIME_TYPE\n",
" );\n",
" this.keyboard_manager.register_events(toinsert);\n",
" // Render to node\n",
" var props = {data: data, metadata: metadata[EXEC_MIME_TYPE]};\n",
" render(props, toinsert[0]);\n",
" element.append(toinsert);\n",
" return toinsert\n",
" }\n",
"\n",
" /* Handle when an output is cleared or removed */\n",
" events.on('clear_output.CodeCell', handleClearOutput);\n",
" events.on('delete.Cell', handleClearOutput);\n",
"\n",
" /* Handle when a new output is added */\n",
" events.on('output_added.OutputArea', handleAddOutput);\n",
"\n",
" /**\n",
" * Register the mime type and append_mime function with output_area\n",
" */\n",
" OutputArea.prototype.register_mime_type(EXEC_MIME_TYPE, append_mime, {\n",
" /* Is output safe? */\n",
" safe: true,\n",
" /* Index of renderer in `output_area.display_order` */\n",
" index: 0\n",
" });\n",
" }\n",
"\n",
" // register the mime type if in Jupyter Notebook environment and previously unregistered\n",
" if (root.Jupyter !== undefined) {\n",
" var events = require('base/js/events');\n",
" var OutputArea = require('notebook/js/outputarea').OutputArea;\n",
"\n",
" if (OutputArea.prototype.mime_types().indexOf(EXEC_MIME_TYPE) == -1) {\n",
" register_renderer(events, OutputArea);\n",
" }\n",
" }\n",
"\n",
" \n",
" if (typeof (root._bokeh_timeout) === \"undefined\" || force === true) {\n",
" root._bokeh_timeout = Date.now() + 5000;\n",
" root._bokeh_failed_load = false;\n",
" }\n",
"\n",
" var NB_LOAD_WARNING = {'data': {'text/html':\n",
" \"<div style='background-color: #fdd'>\\n\"+\n",
" \"<p>\\n\"+\n",
" \"BokehJS does not appear to have successfully loaded. If loading BokehJS from CDN, this \\n\"+\n",
" \"may be due to a slow or bad network connection. Possible fixes:\\n\"+\n",
" \"</p>\\n\"+\n",
" \"<ul>\\n\"+\n",
" \"<li>re-rerun `output_notebook()` to attempt to load from CDN again, or</li>\\n\"+\n",
" \"<li>use INLINE resources instead, as so:</li>\\n\"+\n",
" \"</ul>\\n\"+\n",
" \"<code>\\n\"+\n",
" \"from bokeh.resources import INLINE\\n\"+\n",
" \"output_notebook(resources=INLINE)\\n\"+\n",
" \"</code>\\n\"+\n",
" \"</div>\"}};\n",
"\n",
" function display_loaded() {\n",
" var el = document.getElementById(\"5cb01db7-6a5f-4b7c-945c-2e7ec9bff37a\");\n",
" if (el != null) {\n",
" el.textContent = \"BokehJS is loading...\";\n",
" }\n",
" if (root.Bokeh !== undefined) {\n",
" if (el != null) {\n",
" el.textContent = \"BokehJS \" + root.Bokeh.version + \" successfully loaded.\";\n",
" }\n",
" } else if (Date.now() < root._bokeh_timeout) {\n",
" setTimeout(display_loaded, 100)\n",
" }\n",
" }\n",
"\n",
"\n",
" function run_callbacks() {\n",
" try {\n",
" root._bokeh_onload_callbacks.forEach(function(callback) { callback() });\n",
" }\n",
" finally {\n",
" delete root._bokeh_onload_callbacks\n",
" }\n",
" console.info(\"Bokeh: all callbacks have finished\");\n",
" }\n",
"\n",
" function load_libs(js_urls, callback) {\n",
" root._bokeh_onload_callbacks.push(callback);\n",
" if (root._bokeh_is_loading > 0) {\n",
" console.log(\"Bokeh: BokehJS is being loaded, scheduling callback at\", now());\n",
" return null;\n",
" }\n",
" if (js_urls == null || js_urls.length === 0) {\n",
" run_callbacks();\n",
" return null;\n",
" }\n",
" console.log(\"Bokeh: BokehJS not loaded, scheduling load and callback at\", now());\n",
" root._bokeh_is_loading = js_urls.length;\n",
" for (var i = 0; i < js_urls.length; i++) {\n",
" var url = js_urls[i];\n",
" var s = document.createElement('script');\n",
" s.src = url;\n",
" s.async = false;\n",
" s.onreadystatechange = s.onload = function() {\n",
" root._bokeh_is_loading--;\n",
" if (root._bokeh_is_loading === 0) {\n",
" console.log(\"Bokeh: all BokehJS libraries loaded\");\n",
" run_callbacks()\n",
" }\n",
" };\n",
" s.onerror = function() {\n",
" console.warn(\"failed to load library \" + url);\n",
" };\n",
" console.log(\"Bokeh: injecting script tag for BokehJS library: \", url);\n",
" document.getElementsByTagName(\"head\")[0].appendChild(s);\n",
" }\n",
" };var element = document.getElementById(\"5cb01db7-6a5f-4b7c-945c-2e7ec9bff37a\");\n",
" if (element == null) {\n",
" console.log(\"Bokeh: ERROR: autoload.js configured with elementid '5cb01db7-6a5f-4b7c-945c-2e7ec9bff37a' but no matching script tag was found. \")\n",
" return false;\n",
" }\n",
"\n",
" var js_urls = [\"https://cdn.pydata.org/bokeh/release/bokeh-0.12.10.min.js\", \"https://cdn.pydata.org/bokeh/release/bokeh-widgets-0.12.10.min.js\", \"https://cdn.pydata.org/bokeh/release/bokeh-tables-0.12.10.min.js\", \"https://cdn.pydata.org/bokeh/release/bokeh-gl-0.12.10.min.js\"];\n",
"\n",
" var inline_js = [\n",
" function(Bokeh) {\n",
" Bokeh.set_log_level(\"info\");\n",
" },\n",
" \n",
" function(Bokeh) {\n",
" \n",
" },\n",
" function(Bokeh) {\n",
" console.log(\"Bokeh: injecting CSS: https://cdn.pydata.org/bokeh/release/bokeh-0.12.10.min.css\");\n",
" Bokeh.embed.inject_css(\"https://cdn.pydata.org/bokeh/release/bokeh-0.12.10.min.css\");\n",
" console.log(\"Bokeh: injecting CSS: https://cdn.pydata.org/bokeh/release/bokeh-widgets-0.12.10.min.css\");\n",
" Bokeh.embed.inject_css(\"https://cdn.pydata.org/bokeh/release/bokeh-widgets-0.12.10.min.css\");\n",
" console.log(\"Bokeh: injecting CSS: https://cdn.pydata.org/bokeh/release/bokeh-tables-0.12.10.min.css\");\n",
" Bokeh.embed.inject_css(\"https://cdn.pydata.org/bokeh/release/bokeh-tables-0.12.10.min.css\");\n",
" }\n",
" ];\n",
"\n",
" function run_inline_js() {\n",
" \n",
" if ((root.Bokeh !== undefined) || (force === true)) {\n",
" for (var i = 0; i < inline_js.length; i++) {\n",
" inline_js[i].call(root, root.Bokeh);\n",
" }if (force === true) {\n",
" display_loaded();\n",
" }} else if (Date.now() < root._bokeh_timeout) {\n",
" setTimeout(run_inline_js, 100);\n",
" } else if (!root._bokeh_failed_load) {\n",
" console.log(\"Bokeh: BokehJS failed to load within specified timeout.\");\n",
" root._bokeh_failed_load = true;\n",
" } else if (force !== true) {\n",
" var cell = $(document.getElementById(\"5cb01db7-6a5f-4b7c-945c-2e7ec9bff37a\")).parents('.cell').data().cell;\n",
" cell.output_area.append_execute_result(NB_LOAD_WARNING)\n",
" }\n",
"\n",
" }\n",
"\n",
" if (root._bokeh_is_loading === 0) {\n",
" console.log(\"Bokeh: BokehJS loaded, going straight to plotting\");\n",
" run_inline_js();\n",
" } else {\n",
" load_libs(js_urls, function() {\n",
" console.log(\"Bokeh: BokehJS plotting callback run at\", now());\n",
" run_inline_js();\n",
" });\n",
" }\n",
"}(window));"
],
"application/vnd.bokehjs_load.v0+json": "\n(function(root) {\n function now() {\n return new Date();\n }\n\n var force = true;\n\n if (typeof (root._bokeh_onload_callbacks) === \"undefined\" || force === true) {\n root._bokeh_onload_callbacks = [];\n root._bokeh_is_loading = undefined;\n }\n\n \n\n \n if (typeof (root._bokeh_timeout) === \"undefined\" || force === true) {\n root._bokeh_timeout = Date.now() + 5000;\n root._bokeh_failed_load = false;\n }\n\n var NB_LOAD_WARNING = {'data': {'text/html':\n \"<div style='background-color: #fdd'>\\n\"+\n \"<p>\\n\"+\n \"BokehJS does not appear to have successfully loaded. If loading BokehJS from CDN, this \\n\"+\n \"may be due to a slow or bad network connection. Possible fixes:\\n\"+\n \"</p>\\n\"+\n \"<ul>\\n\"+\n \"<li>re-rerun `output_notebook()` to attempt to load from CDN again, or</li>\\n\"+\n \"<li>use INLINE resources instead, as so:</li>\\n\"+\n \"</ul>\\n\"+\n \"<code>\\n\"+\n \"from bokeh.resources import INLINE\\n\"+\n \"output_notebook(resources=INLINE)\\n\"+\n \"</code>\\n\"+\n \"</div>\"}};\n\n function display_loaded() {\n var el = document.getElementById(\"5cb01db7-6a5f-4b7c-945c-2e7ec9bff37a\");\n if (el != null) {\n el.textContent = \"BokehJS is loading...\";\n }\n if (root.Bokeh !== undefined) {\n if (el != null) {\n el.textContent = \"BokehJS \" + root.Bokeh.version + \" successfully loaded.\";\n }\n } else if (Date.now() < root._bokeh_timeout) {\n setTimeout(display_loaded, 100)\n }\n }\n\n\n function run_callbacks() {\n try {\n root._bokeh_onload_callbacks.forEach(function(callback) { callback() });\n }\n finally {\n delete root._bokeh_onload_callbacks\n }\n console.info(\"Bokeh: all callbacks have finished\");\n }\n\n function load_libs(js_urls, callback) {\n root._bokeh_onload_callbacks.push(callback);\n if (root._bokeh_is_loading > 0) {\n console.log(\"Bokeh: BokehJS is being loaded, scheduling callback at\", now());\n return null;\n }\n if (js_urls == null || js_urls.length === 0) {\n run_callbacks();\n return null;\n }\n console.log(\"Bokeh: BokehJS not loaded, scheduling load and callback at\", now());\n root._bokeh_is_loading = js_urls.length;\n for (var i = 0; i < js_urls.length; i++) {\n var url = js_urls[i];\n var s = document.createElement('script');\n s.src = url;\n s.async = false;\n s.onreadystatechange = s.onload = function() {\n root._bokeh_is_loading--;\n if (root._bokeh_is_loading === 0) {\n console.log(\"Bokeh: all BokehJS libraries loaded\");\n run_callbacks()\n }\n };\n s.onerror = function() {\n console.warn(\"failed to load library \" + url);\n };\n console.log(\"Bokeh: injecting script tag for BokehJS library: \", url);\n document.getElementsByTagName(\"head\")[0].appendChild(s);\n }\n };var element = document.getElementById(\"5cb01db7-6a5f-4b7c-945c-2e7ec9bff37a\");\n if (element == null) {\n console.log(\"Bokeh: ERROR: autoload.js configured with elementid '5cb01db7-6a5f-4b7c-945c-2e7ec9bff37a' but no matching script tag was found. \")\n return false;\n }\n\n var js_urls = [\"https://cdn.pydata.org/bokeh/release/bokeh-0.12.10.min.js\", \"https://cdn.pydata.org/bokeh/release/bokeh-widgets-0.12.10.min.js\", \"https://cdn.pydata.org/bokeh/release/bokeh-tables-0.12.10.min.js\", \"https://cdn.pydata.org/bokeh/release/bokeh-gl-0.12.10.min.js\"];\n\n var inline_js = [\n function(Bokeh) {\n Bokeh.set_log_level(\"info\");\n },\n \n function(Bokeh) {\n \n },\n function(Bokeh) {\n console.log(\"Bokeh: injecting CSS: https://cdn.pydata.org/bokeh/release/bokeh-0.12.10.min.css\");\n Bokeh.embed.inject_css(\"https://cdn.pydata.org/bokeh/release/bokeh-0.12.10.min.css\");\n console.log(\"Bokeh: injecting CSS: https://cdn.pydata.org/bokeh/release/bokeh-widgets-0.12.10.min.css\");\n Bokeh.embed.inject_css(\"https://cdn.pydata.org/bokeh/release/bokeh-widgets-0.12.10.min.css\");\n console.log(\"Bokeh: injecting CSS: https://cdn.pydata.org/bokeh/release/bokeh-tables-0.12.10.min.css\");\n Bokeh.embed.inject_css(\"https://cdn.pydata.org/bokeh/release/bokeh-tables-0.12.10.min.css\");\n }\n ];\n\n function run_inline_js() {\n \n if ((root.Bokeh !== undefined) || (force === true)) {\n for (var i = 0; i < inline_js.length; i++) {\n inline_js[i].call(root, root.Bokeh);\n }if (force === true) {\n display_loaded();\n }} else if (Date.now() < root._bokeh_timeout) {\n setTimeout(run_inline_js, 100);\n } else if (!root._bokeh_failed_load) {\n console.log(\"Bokeh: BokehJS failed to load within specified timeout.\");\n root._bokeh_failed_load = true;\n } else if (force !== true) {\n var cell = $(document.getElementById(\"5cb01db7-6a5f-4b7c-945c-2e7ec9bff37a\")).parents('.cell').data().cell;\n cell.output_area.append_execute_result(NB_LOAD_WARNING)\n }\n\n }\n\n if (root._bokeh_is_loading === 0) {\n console.log(\"Bokeh: BokehJS loaded, going straight to plotting\");\n run_inline_js();\n } else {\n load_libs(js_urls, function() {\n console.log(\"Bokeh: BokehJS plotting callback run at\", now());\n run_inline_js();\n });\n }\n}(window));"
},
"metadata": {},
"output_type": "display_data"
}
],
"source": [
"import pandas as pd\n",
"import numpy as np\n",
"from bokeh.io import show, output_notebook\n",
"from bokeh.models import GeoJSONDataSource, LinearColorMapper\n",
"import geopandas as gpd\n",
"from bokeh.palettes import Viridis6 as palette\n",
"from bokeh.plotting import figure\n",
"\n",
"output_notebook()"
]
},
{
"cell_type": "code",
"execution_count": 2,
"metadata": {},
"outputs": [],
"source": [
"#obtain countries shapes\n",
"world = gpd.read_file(gpd.datasets.get_path('naturalearth_lowres'))\n",
"europe = (world.loc[world['continent'] == 'Europe'])"
]
},
{
"cell_type": "code",
"execution_count": 3,
"metadata": {},
"outputs": [],
"source": [
"geo_source = GeoJSONDataSource(geojson=europe.to_json())"
]
},
{
"cell_type": "code",
"execution_count": 4,
"metadata": {
"scrolled": false
},
"outputs": [
{
"data": {
"text/html": [
"\n",
"<div class=\"bk-root\">\n",
" <div class=\"bk-plotdiv\" id=\"7431ff5d-2810-49a3-8f96-b594ad8822ac\"></div>\n",
"</div>"
]
},
"metadata": {},
"output_type": "display_data"
},
{
"data": {
"application/javascript": [
"(function(root) {\n",
" function embed_document(root) {\n",
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Application\",\"version\":\"0.12.10\"}};\n",
" var render_items = [{\"docid\":\"cfcce545-b6d6-4592-86f5-6887fd1d703c\",\"elementid\":\"7431ff5d-2810-49a3-8f96-b594ad8822ac\",\"modelid\":\"1ed86fb3-c2e8-4dbd-a8a4-c21c3281e10c\"}];\n",
"\n",
" root.Bokeh.embed.embed_items(docs_json, render_items);\n",
" }\n",
"\n",
" if (root.Bokeh !== undefined) {\n",
" embed_document(root);\n",
" } else {\n",
" var attempts = 0;\n",
" var timer = setInterval(function(root) {\n",
" if (root.Bokeh !== undefined) {\n",
" embed_document(root);\n",
" clearInterval(timer);\n",
" }\n",
" attempts++;\n",
" if (attempts > 100) {\n",
" console.log(\"Bokeh: ERROR: Unable to embed document because BokehJS library is missing\")\n",
" clearInterval(timer);\n",
" }\n",
" }, 10, root)\n",
" }\n",
"})(window);"
],
"application/vnd.bokehjs_exec.v0+json": ""
},
"metadata": {
"application/vnd.bokehjs_exec.v0+json": {
"id": "1ed86fb3-c2e8-4dbd-a8a4-c21c3281e10c"
}
},
"output_type": "display_data"
}
],
"source": [
"p = figure(title=\"Europe\", x_range=(-30,60), y_range=(30,85))\n",
"\n",
"p.patches('xs', 'ys', fill_alpha=0.7, \n",
" fill_color={'field': 'gdp_md_est', 'transform': LinearColorMapper(palette=palette)}, \n",
" line_color='black', line_width=0.5, source=geo_source)\n",
"\n",
"show(p)"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": []
}
],
"metadata": {
"kernelspec": {
"display_name": "Python 3",
"language": "python",
"name": "python3"
},
"language_info": {
"codemirror_mode": {
"name": "ipython",
"version": 3
},
"file_extension": ".py",
"mimetype": "text/x-python",
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.6.3"
}
},
"nbformat": 4,
"nbformat_minor": 2
}
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