Renan Valieris rvalieris

rvalieris / qpdata_to_geojson.groovy

Created September 2, 2025 13:42

Converts Qupath qpdata annotations to geojson


	import static groovy.io.FileType.FILES

	def WSI_DIR = '/path/to/WSI/'
	def WSI_EXT = '.svs'
	def WSI_ANNOTS_DIR = '/path/to/qpdata/annots/'
	def WSI_ANNOTS_EXT = '.qpdata'
	def OUT_DIR = '/path/to/outputs/'

	def wsi_map = [:]