ryanmt

require 'spec_helper'


describe "Digestor" do
	before do 
		@seq = "YESTESTTHISDECLARATIVESENTENCEKSCIENTISTLETSCALLEMFINISHEDYALL" #Thanks John
		@seq2 = "MKWVTFISLLLLFSSAYSRGVFRRDTHKSEIAHRFKDLGEEHFKGLVLIAFSQYLQQCPFDEHVKLVNELTEFAKTCVADESHAGCEKSLHTLFGDELCKVASLRETYGDMADCCEKQEPERNECFLSHKDDSPDLPKLKPDPNTLCDEFKADEKKFWGKYLYEIARRHPYFYAPELLYYANKYNGVFQECCQAEDKGACLLPKIETMREKVLASSARQRLRCASIQKFGERALKAWSVARLSQKFPKAEFVEVTKLVTDLTKVHKECCHGDLLECADDRADLAKYICDNQDTISSKLKECCDKPLLEKSHCIAEVEKDAIPENLPPLTADFAEDKDVCKNYQEAKDAFLGSFLYEYSRRHPEYAVSVLLRLAKEYEATLEECCAKDDPHACYSTVFDKLKHLVDEPQNLIKQNCDQFEKLGEYGFQNALIVRYTRKVPQVSTPTLVEVSRSLGKVGTRCCTKPESERMPCTEDYLSLILNRLCVLHEKTPVSEKVTKCCTESLVNRRPCFSALTPDETYVPKAFDEKLFTFHADICTLPDTEKQIKKQTALVELLKHKPKATEEQLKTVMENFVAFVDKCCAADDKEACFAVEGPKLVVSTQTALA"
	end
# This iterates throught the conditions (each enzyme) and makes for pretty output
  %w(Trypsin Trypsin/P Arg-C Asp-N Chymotrypsin CNBR+Trypsin).each do |enzyme|

ryanmt

#!/usr/bin/env ruby

require 'benchmark'
require 'spec_helper'

seq2 = "MKWVTFISLLLLFSSAYSRGVFRRDTHKSEIAHRFKDLGEEHFKGLVLIAFSQYLQQCPFDEHVKLVNELTEFAKTCVADESHAGCEKSLHTLFGDELCKVASLRETYGDMADCCEKQEPERNECFLSHKDDSPDLPKLKPDPNTLCDEFKADEKKFWGKYLYEIARRHPYFYAPELLYYANKYNGVFQECCQAEDKGACLLPKIETMREKVLASSARQRLRCASIQKFGERALKAWSVARLSQKFPKAEFVEVTKLVTDLTKVHKECCHGDLLECADDRADLAKYICDNQDTISSKLKECCDKPLLEKSHCIAEVEKDAIPENLPPLTADFAEDKDVCKNYQEAKDAFLGSFLYEYSRRHPEYAVSVLLRLAKEYEATLEECCAKDDPHACYSTVFDKLKHLVDEPQNLIKQNCDQFEKLGEYGFQNALIVRYTRKVPQVSTPTLVEVSRSLGKVGTRCCTKPESERMPCTEDYLSLILNRLCVLHEKTPVSEKVTKCCTESLVNRRPCFSALTPDETYVPKAFDEKLFTFHADICTLPDTEKQIKKQTALVELLKHKPKATEEQLKTVMENFVAFVDKCCAADDKEACFAVEGPKLVVSTQTALA"
	Benchmark.bm(5) do |x|
		x.report ('Trypsin @ 0 missed cleavages (100 times)') do 
			100.times do 
				d = Digestor.new('trypsin')

ryanmt

--------- beginning of /dev/log/system

I/Vold    (  119): Vold 2.1 (the revenge) firing up

I/SystemServer(  354): Entered the Android system server!

I/SystemServer(  354): Entropy Mixer

I/SystemServer(  354): Power Manager

ryanmt

Keybase proof

I hereby claim:

• I am ryanmt on github.
• I am ryanmt (https://keybase.io/ryanmt) on keybase.
• I have a public key ASBWThXJeZDruBlkX4PDYBCoVmQsF3J2IqGJBu3SQHgDZQo

To claim this, I am signing this object:

ryanmt

#!/bin/bash

# Video Quality
# The range of the CRF scale is 0–51, where 0 is lossless, 23 is the default,
# and 51 is worst quality possible. A lower value generally leads to higher
# quality, and a subjectively sane range is 17–28
QUALITY=28

# check if slop command exists
if ! command -v slop &> /dev/null