Sajid Ali s-sajid-ali
s-sajid-ali
/ icaruswf-theta-2-MPI-ranks-per-node
Created
December 22, 2022 17:07
submit script for icarus workflow on alcf theta that results in a crash
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| #!/bin/bash | |
| #COBALT -A HEP_on_HPC | |
| #COBALT -n 4 | |
| #COBALT -t 01:00:00 | |
| #COBALT --mode script | |
| export NUM_DAEMON_NODES=1 | |
| export NUM_DAEMON_TOTAL_RANKS=$(($NUM_DAEMON_NODES*16)) | |
| export NUM_DAEMON_HYPERTHREADS=1 |
s-sajid-ali
/ petsc-ksp-crash-debug-mode-asan
Created
February 22, 2023 23:08
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| Propagator: turn 10/inf., time = 0.507s, macroparticles = (1024) / () | |
| ================================================================= | |
| ==24348==ERROR: AddressSanitizer: global-buffer-overflow on address 0x7fffefea4650 at pc 0x7fffe7b84009 bp 0x7fffffff5c30 sp 0x7fffffff5c28 | |
| READ of size 4 at 0x7fffefea4650 thread T0 | |
| #0 0x7fffe7b84008 in VecLockReadPush /wclustre/accelsim/sajid/packages/petsc/src/vec/vec/interface/rvector.c:3824 | |
| #1 0x7fffedc9b91e in PCApply /wclustre/accelsim/sajid/packages/petsc/src/ksp/pc/interface/precon.c:439 | |
| #2 0x7fffec938bbf in KSP_PCApply /wclustre/accelsim/sajid/packages/petsc/include/petsc/private/kspimpl.h:378 | |
| #3 0x7fffec93a6a5 in KSPSolve_PREONLY /wclustre/accelsim/sajid/packages/petsc/src/ksp/ksp/impls/preonly/preonly.c:21 | |
| #4 0x7fffec59829b in KSPSolve_Private /wclustre/accelsim/sajid/packages/petsc/src/ksp/ksp/interface/itfunc.c:897 | |
| #5 0x7fffec59fa88 in KSPSolve /wclustre/accelsim/sajid/packages/petsc/src/ksp/ksp/interface/itfunc.c:1069 |
s-sajid-ali
/ petsc-ksp-crash-debug-mode-asan-checkstack
Created
February 23, 2023 00:32
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| Propagator: turn 10/inf., time = 0.521s, macroparticles = (1024) / () | |
| ================================================================= | |
| ==5750==ERROR: AddressSanitizer: global-buffer-overflow on address 0x7fffefea4650 at pc 0x7fffe7b84009 bp 0x7fffffff64b0 sp 0x7fffffff64a8 | |
| READ of size 4 at 0x7fffefea4650 thread T0 | |
| #0 0x7fffe7b84008 in VecLockReadPush /wclustre/accelsim/sajid/packages/petsc/src/vec/vec/interface/rvector.c:3824 | |
| #1 0x7fffedc9b91e in PCApply /wclustre/accelsim/sajid/packages/petsc/src/ksp/pc/interface/precon.c:439 | |
| #2 0x7fffec938bbf in KSP_PCApply /wclustre/accelsim/sajid/packages/petsc/include/petsc/private/kspimpl.h:378 | |
| #3 0x7fffec93a6a5 in KSPSolve_PREONLY /wclustre/accelsim/sajid/packages/petsc/src/ksp/ksp/impls/preonly/preonly.c:21 | |
| #4 0x7fffec59829b in KSPSolve_Private /wclustre/accelsim/sajid/packages/petsc/src/ksp/ksp/interface/itfunc.c:897 | |
| #5 0x7fffec59fa88 in KSPSolve /wclustre/accelsim/sajid/packages/petsc/src/ksp/ksp/interface/itfunc.c:1069 |
s-sajid-ali
/ wc-hang-script-debug
Created
March 30, 2023 15:38
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| bash-4.2$ cat /wclustre/accelsim/spack-shared-v3/setup_env_synergia-devel3-cpu-ivybridge-001.sh | |
| #Generated by spack env activate --sh synergia-devel3-cpu-ivybridge-001 &> setup_env_synergia-devel3-cpu-ivybridge-001.sh | |
| export SPACK_ENV=/wclustre/accelsim/spack-shared-v3/spack/var/spack/environments/synergia-devel3-cpu-ivybridge-001; | |
| alias despacktivate='spack env deactivate'; | |
| export ACLOCAL_PATH=/wclustre/accelsim/spack-shared-v3/spack/var/spack/environments/synergia-devel3-cpu-ivybridge-001/.spack-env/view/share/aclocal; | |
| export CMAKE_PREFIX_PATH=/wclustre/accelsim/spack-shared-v3/spack/var/spack/environments/synergia-devel3-cpu-ivybridge-001/.spack-env/view; | |
| export CPATH=/wclustre/accelsim/spack-shared-v3/spack/var/spack/environments/synergia-devel3-cpu-ivybridge-001/.spack-env/view/include/python3.9:/wclustre/accelsim/spack-shared-v3/spack/var/spack/environments/synergia-devel3-cpu-ivybridge-001/.spack-env/view/include/eigen3; | |
| export MANPATH=/wclustre/accelsim/spack-shared-v3/spack/var/spack/environments/sy |
s-sajid-ali
/ openpmd-wc-fnal-spec.json
Created
April 14, 2023 20:24
spack-spec-openpmd-hdf5-crash-wc-work1
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| { | |
| "spec": { | |
| "_meta": { | |
| "version": 3 | |
| }, | |
| "nodes": [ | |
| { | |
| "name": "openpmd-api", | |
| "version": "0.15.1", | |
| "arch": { |
s-sajid-ali
/ gist:bbf0328c7fe1ecb3090d43fb3381f28c
Created
April 15, 2023 00:35
spack-spec-openpmd-hdf5-ompi-nocrash-wc-work1
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| { | |
| "spec": { | |
| "_meta": { | |
| "version": 3 | |
| }, | |
| "nodes": [ | |
| { | |
| "name": "openpmd-api", | |
| "version": "0.15.1", | |
| "arch": { |