CK, Lee s4553711
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| # Include of ExcelHelper Module | |
| use Tool::DB::ExcelHelper; | |
| # definition of mapping between xls title and column | |
| my $xls_schema = { | |
| 'Date' => 'date', | |
| 'Catalog No' => 'catno', | |
| 'Type' => 'type', | |
| 'old data' => 'old_val', | |
| 'new data' => 'new_val', |
s4553711
/ gist:6059718
Created
July 23, 2013 03:48
A sample code for parsing KEGG Pathway from KGML
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| #!/usr/bin/perl | |
| use local::lib; | |
| use utf8; | |
| use Bio::Database::KEGG::Path; | |
| use Data::Dumper; | |
| # input file (KGML file) | |
| my $file = shift; | |
| # parse the pathway info |
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| set tabstop=4 | |
| set shiftwidth=4 | |
| set nu | |
| set hls | |
| call pathogen#runtime_append_all_bundles() | |
| syntax on | |
| filetype plugin indent on |
s4553711
/ FastaMD5.java
Created
September 23, 2013 06:53
— forked from lindenb/FastaMD5.java
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| import java.io.*; | |
| import java.security.MessageDigest; | |
| public class FastaMD5 | |
| { | |
| public static void main(String args[]) throws Exception | |
| { | |
| int len=0; | |
| byte[] buffer = new byte[1]; | |
| MessageDigest complete = null; |
s4553711
/ gist:7802355
Created
December 5, 2013 09:10
Add center text on the charts if there is no data in highcharts
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| var ele = $('#canvas').highcharts(); | |
| var textWidth = ele.chartWidth; | |
| $('#canvas').highcharts().renderer.text("No Data Available.",(textWidth/2)-65,115).css({ | |
| color: '#4572A7', | |
| fontSize: '16px', | |
| textAlign: 'center', | |
| }).attr({zIndex: 9999999}).add(); |
s4553711
/ gist:9488399
Created
March 11, 2014 15:41
Some example for subprocess.Popen exception example
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| #!/usr/bin/python | |
| import subprocess | |
| import os | |
| import sys | |
| #res = subprocess.Popen(['ls','-al','/ahome'],stdout=subprocess.PIPE,stderr=subprocess.PIPE); | |
| #output,error = res.communicate() | |
| #if res.returncode: | |
| # #raise Exception(error) |
s4553711
/ gist:10897362
Created
April 16, 2014 15:49
CodeForces 1A and tutorial in http://algocoding.wordpress.com/2013/03/09/codeforces-tutorial-1-introduction/
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| #include <iostream> | |
| using namespace std; | |
| int main() { | |
| long long int n; | |
| long long int m; | |
| long long int a; | |
| cin >> n; | |
| cin >> m; |
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| #include <stdio.h> | |
| #include <stdlib.h> | |
| #include <string.h> | |
| #include <math.h> | |
| // The source of this code is http://kasonblog.blogspot.tw/2012/04/10810-ultra-quicksort-uva-online-judge.html | |
| // and its realted information http://program-lover.blogspot.tw/2008/10/mergesort.html | |
| // or http://programming-study-notes.blogspot.tw/2013/12/uva-10810-ultra-quicksort.html | |
| // or http://www.tuicool.com/articles/ANb6Fv |
s4553711
/ wget-follow-sylink
Created
May 28, 2014 09:30
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| function download_follow_link { | |
| URL=$1 | |
| DIRPATH=$(echo "$URL" | sed s-ftp://--) | |
| DIRPATH=$(echo ${DIRPATH%/*}) | |
| BASEURL=$(echo "$DIRPATH" | cut -d '/' -f1) | |
| wget -m $URL | |
| SYMLINKS=$(find $DIRPATH -type l) | |
| for SYMLINK in $SYMLINKS | |
| do |
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| var page = require('webpage').create(); | |
| var system = require('system'); | |
| var map_result = { | |
| "Reference Sequence" : "mouse_mm10(UCSC)", | |
| "Known SNP/Indel" : "dbSNP138", | |
| "leftReadsInput" : "36730566", | |
| "leftReadsMapped" : "35130795 (95.6% of input)", | |
| "leftReadsOfThese" : "9607 ( 0.0%) have multiple alignments (11204 have >1)", | |
| "rightReadsInput" : "36730566", |