sahilseth

#!/bin/bash

## https://github.com/kitematic/kitematic/blob/master/util/reset

DIR="$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )"

sudo rm -f /usr/local/bin/docker*
pkill VirtualBox
pkill VBox
rm -rf ~/Library/Application\ Support/Kitematic/

sahilseth

Convert MOV to GIF using FFmpeg and ImageMagick

I tried a few different techniques to make a GIF via command-line and the following gives me the best control of quality and size. Once you're all setup, you'll be pumping out GIFs in no time!

Preparation

Install FFmpeg

brew install ffmpeg [all your options]
##* Example:
brew install ffmpeg --with-fdk-aac --with-ffplay --with-freetype --with-frei0r --with-libass --with-libvo-aacenc --with-libvorbis --with-libvpx --with-opencore-amr --with-openjpeg --with-opus --with-rtmpdump --with-schroedinger --with-speex --with-theora --with-tools

sahilseth

## 
brew install llvm --with-clang --with-asan 

then
brew install tldr

sahilseth

# http://stackoverflow.com/questions/14113427/brew-update-failed
cd $(brew --prefix)
git reset --hard HEAD

# cellar on hpcc cluster
# --prefix=~/.linuxbrew/Cellar

git clean -df

brew update

sahilseth

log2(as.numeric(select(clust, PATC53.377)[1,]) / as.numeric(select(clust, one_of(newrefs))[1,]))


VS

as.numeric(select(clust, PATC53.377)[1,]) / as.numeric(select(clust, one_of(newrefs))[1,]) %>% log2()

sahilseth

# idea is to, first filter based on a condition, and then display the results
Rscript -e 'library(dplyr);params::read_sheet("flow_details.txt") %>% filter(exit_code>0)' | less

# we add select, to show only a few columns:
Rscript -e 'library(dplyr);params::read_sheet("flow_details.txt") %>% filter(exit_code>0) %>% select(jobname, jobnm, num, exit_code, cmd)' | less

# add kable, to show results in a markdown format:
Rscript -e 'library(dplyr);library(params);read_sheet("flow_details.txt") %>% filter(exit_code>0) %>% select(jobname, jobnm, num, exit_code, cmd)%>% kable()' | less

sahilseth

awk '{ if($1 !~ /^#/){print "chr"$0} else{print $0} }'  Homo_sapiens.GRCh37.75.gtf

sahilseth

Rscript wrangl_00_run_htseq.R | tee wrangl_00_run_htseq.Rout

sahilseth

#!/bin/bash
#set -x 

# Shows you the largest objects in your repo's pack file.
# Written for osx.
#
# @see http://stubbisms.wordpress.com/2009/07/10/git-script-to-show-largest-pack-objects-and-trim-your-waist-line/
# @author Antony Stubbs

# set the internal field spereator to line break, so that we can iterate easily over the verify-pack output

sahilseth

# http://www.r-bloggers.com/r-function-of-the-day-foodweb/

#install.packages("mvbutils")
library(mvbutils)

foodweb()