Sam Friedman samtx

Modules/Commands to install

use pip install <module> --user to install to user account without root privileges

Setup instructions

TAMU HPRC Python virtual environment setup: https://hprc.tamu.edu/wiki/SW:Python

On the Ada cluster, run these commands one after the other. They probably also work on the Terra and Curie clusters.

module load Python/2.7.12-foss-2017A myPython/2.7.12-foss-2017A

$MYCREATEVIRTENV

Texas A&M, MEEN 431, Dynamic Systems and Controls, Project Sam Friedman, Nilesh Pore

	function mat = np2mat(npary)

	% convert python (Numpy) ndarray to matlab
	sh = double(py.array.array('d',npary.shape));
	npary2 = double(py.array.array('d',py.numpy.nditer(npary)));
	mat = reshape(npary2,fliplr(sh))'; % matlab 2d array

	end

	function npary = mat2np(mat)

	% convert matlab matrix to python (Numpy) ndarray
	sh = fliplr(size(mat));
	mat2 = reshape(mat,1,numel(mat)); % [1, n] vector
	npary = py.numpy.array(mat2);
	npary = npary.reshape(sh).transpose(); % python ndarray

	end

	# add to ~/.gitconfig file
	# By Slipp D. Thompson, at http://stackoverflow.com/questions/1838873/visualizing-branch-topology-in-git/34467298#34467298

	[alias]
	lg = !"git lg1"
	lg1 = !"git lg1-specific --all"
	lg2 = !"git lg2-specific --all"
	lg3 = !"git lg3-specific --all"
	lg1-specific = log --graph --abbrev-commit --decorate --format=format:'%C(bold blue)%h%C(reset) - %C(bold green)(%ar)%C(reset) %C(white)%s%C(reset) %C(dim white)- %an%C(reset)%C(auto)%d%C(reset)'
	lg2-specific = log --graph --abbrev-commit --decorate --format=format:'%C(bold blue)%h%C(reset) - %C(bold cyan)%aD%C(reset) %C(bold green)(%ar)%C(reset)%C(auto)%d%C(reset)%n'' %C(white)%s%C(reset) %C(dim white)- %an%C(reset)'

	# Inference Statistics
	# Casella and Berger