samuell

program gc;
 
uses
    Sysutils;
 
var
    FastaFile: TextFile;
    CurrentLine: String;
    GCCount: LongInt;
    ATCount: LongInt;

samuell

program gc;
{$mode objfpc} // Do not forget this ever
 
uses
    Sysutils;
 
var
    FastaFile: TextFile;
    CurrentLine: String;
    GCCount: Integer;

samuell

import std.stdio;
import std.string;
import std.algorithm;
import std.regex;

void main() {
	File file = File("Homo_sapiens.GRCh37.67.dna_rm.chromosome.Y.fa","r");
	int gcCount = 0;
    int atCount = 0;
	int totalBaseCount = 0;

samuell

#include <string>
#include <fstream>
#include <iostream>

int main() {

    std::fstream fs("Homo_sapiens.GRCh37.67.dna_rm.chromosome.Y.fa", std::ios::in);

    int a = 0;
    int t = 0;

samuell

#include <stdio.h>

int main()
{
  char buf[1000];
  int gc=0;
  int at=0;
  FILE *f=fopen("Homo_sapiens.GRCh37.67.dna_rm.chromosome.Y.fa","r");
  while (fgets(buf,1000,f))
    if (*buf!='>') {

samuell

#include <stdio.h>
#include <assert.h>

int main() {
    FILE * inputFile = fopen( "Homo_sapiens.GRCh37.67.dna_rm.chromosome.Y.fa", "rb" );

    size_t gcCount = 0;
    size_t atCount = 0;

    for ( char c; (c = fgetc_unlocked( inputFile )) != EOF; ) {

samuell

def main():
    file = open("Homo_sapiens.GRCh37.67.dna_rm.chromosome.Y.fa","rb")
    gcCount = 0
    atCount = 0
    while 1:
        lines = file.readlines(10000)
        if not lines:
            break        
        for line in lines:
            if line and not line[0] == ">":

samuell

def main():
    file = open("Homo_sapiens.GRCh37.67.dna_rm.chromosome.Y.fa","rb")
    gcCount = 0
    atCount = 0
    while 1:
        lines = file.readlines(1000)
        if not lines:
            break        
        for line in lines:
            if line and not line[0] == ">":

samuell

#include <stdio.h>
#include <stdlib.h>

#define MAXFLEN 70000000 /* Larger than the file. */

int main()
{
  char *m=malloc(MAXFLEN);
  int gc=0;
  int at=0;

samuell

#include <stdio.h>
#include <stdlib.h>

#define MAXFLEN 70000000 /* Larger than the file. */

int main()
{
  char *m=malloc(MAXFLEN);
  char tablegc[256];
  char tableat[256];