sashaphanes
sashaphanes
/ fasta.maker.pl
Last active
August 29, 2015 13:57
takes a list of protein accession numbers with SNP information from STDIN, trims the SNPs, and generates a .fasta containing amino acid sequences for each accession
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| #!/usr/bin/perl | |
| use strict; | |
| use warnings; | |
| use LWP::Simple; | |
| # pipe STDIN to a loop that | |
| # a) removes the strings after each accession number | |
| # b) puts the remaining accession numbers from each line into an array | |
| # $IN = \*STDIN; |
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