The instructions for installing OMERO on Mac OS X using Homebrew are available in the OMERO documentation.
Sébastien Besson sbesson
sbesson
/ README.md
Created
March 22, 2012 20:21
— forked from joshmoore/README.md
Bootstrap script for creating and installing OMERO via Homebrew.
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| Buildfile: /Users/sebastien/code/openmicroscopy/build.xml | |
| check-ivy: | |
| Created dir: /Users/sebastien/code/openmicroscopy/target | |
| :: Ivy 2.1.0 - 20090925235825 :: http://ant.apache.org/ivy/ :: | |
| :: loading settings :: file = /Users/sebastien/code/openmicroscopy/etc/ivysettings.xml | |
| build-scons: | |
| Expanding: /Users/sebastien/code/openmicroscopy/lib/repository/scons-local-1.2.0.d20090223.zip into /Users/sebastien/code/openmicroscopy/target/scons | |
| Entering /Users/sebastien/code/openmicroscopy/components/dsl... |
sbesson
/ MacbookPro1,1 - 10.6.8
Created
April 23, 2012 13:01
Errors caused by setting DYLD_LIBRARY_PATH
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| omes-MacBook-Pro-15:openmicroscopy ome$ java -version | |
| Error occurred during initialization of VM | |
| Unable to load native library: libjava.jnilib | |
| omes-MacBook-Pro-15:openmicroscopy ome$ unset DYLD_LIBRARY_PATH | |
| omes-MacBook-Pro-15:openmicroscopy ome$ java -version | |
| java version "1.6.0_31" | |
| Java(TM) SE Runtime Environment (build 1.6.0_31-b04-415-10M3646) | |
| Java HotSpot(TM) Client VM (build 20.6-b01-415, mixed mode) |
sbesson
/ testCombineImages.m
Created
May 8, 2012 15:29
Test emission wavelength after running Combine Images script
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| %% Create session | |
| loadOmero | |
| client = omero.client('localhost', 4064); | |
| session = client.createSession('sebastien', 'omero'); | |
| % Create id list | |
| ids = java.util.ArrayList(); | |
| ids.add(java.lang.Long(326)); | |
| ids.add(java.lang.Long(327)); |
sbesson
/ testCombineImages.py
Created
May 9, 2012 07:45
Test emission wavelength after running Combine Images script
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| import omero | |
| from omero.gateway import BlitzGateway | |
| conn = BlitzGateway('sebastien', 'omero', port=4064, host='localhost') | |
| conn.connect() | |
| imageId = [326,327] | |
| for i in imageId: | |
| # Get the image | |
| print 'Image ' + str(i) | |
| image = conn.getObject("Image", i) |
sbesson
/ figureScriptsTest.py
Created
May 25, 2012 13:29
Test permissions/namespaces for figure scripts
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| #! /usr/local/bin/python | |
| import omero | |
| from omero.gateway import BlitzGateway | |
| import omero.scripts | |
| def runTests(): | |
| # List users to test | |
| users = ["sebastien","test"] | |
sbesson
/ testBfsavePerformance.m
Created
July 11, 2012 07:30
Assess performance of bfsave with regard to Matlab built-in imwrite
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| %% Compare bfsave with imwrite | |
| bfCheckJavaPath() | |
| path = '/tmp/test.ome.tiff'; | |
| N = [10 20 50 100 200 500]; | |
| T = [10 20 50 100 200 500]; | |
| r= zeros(numel(N),numel(T)); | |
| for i = 1:numel(N) | |
| for j = 1:numel(T) | |
| I = uint8(rand(N(i),N(i),1,1,T(j))*(2^8-1)); |
sbesson
/ README.md
Last active
October 10, 2015 08:58
— forked from joshmoore/README.md
Bootstrap script for creating and installing OMERO via Homebrew.
See http://www.openmicroscopy.org/site/support/omero5/sysadmins/unix/server-install-homebrew.html for instructions on how to install OMERO via Homebrew
sbesson
/ README.md
Created
September 7, 2012 12:46
— forked from joshmoore/README.md
Generate OME's download page
This gist has migrated to https://github.com/openmicroscopy/ome-release
sbesson
/ ome_merge.py
Created
September 26, 2012 12:29
— forked from joshmoore/ome_merge.py
Script to merge all PRs with a given label.
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| This gist is being merged into the OME mainline. Please see: | |
| https://github.com/snoopycrimecop/snoopycrimecop/blob/master |
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