simon-anders

import numpy as np
import pysam
import numba

@numba.njit
def _check_cigar_pos(pos, cigar):
    if pos > cigar.shape[0]:
        raise ValueError("Invalid CIGAR string (1)")

@numba.njit

simon-anders

# Docker container with Monocle3

FROM debian:latest

ARG NCORES=3

RUN apt-get update 
RUN apt-get install -y r-base-dev

ARG BIOC_INSTALL_ARGS="Ncpus=$NCORES, verbose=TRUE"