Kamil Slowikowski slowkow

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moooooo

Computational biologist. Using transcriptomics to learn about inflammation and cancer.

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slowkow / download_imex.sh

Created May 16, 2018 19:53

Download all human protein-protein interactions from IMEX.

	#!/usr/bin/env bash
	#
	# See here for more information: https://www.ebi.ac.uk/intact/imex/home.xhtml

	# All human protein interactions.
	# Query: taxidA:9606 AND taxidB:9606
	URL='https://www.ebi.ac.uk/intact/imex/binaryDownload?&serviceURL=http://www.ebi.ac.uk/Tools/webservices/psicquic/imex/webservices/current/search/&query=taxidA:9606%20AND%20taxidB:9606&format=tab27&conversationContext=1'

	# This downloads more than 1G of data and compresses it.
	curl "$URL" \| gzip > imex.txt.gz

slowkow / take-screenshot.scpt

Last active September 29, 2019 01:04

Applescript to take a screenshot with the application title in the filename.

	-- take-screenshot.scpt
	-- Kamil Slowikowski
	-- 2019-09-28

	-- Get the title of the frontmost application window.
	-- https://stackoverflow.com/questions/5292204
	global frontApp, frontAppName, windowTitle
	set windowTitle to ""
	tell application "System Events"
	set frontApp to first application process whose frontmost is true

slowkow / try-showtext.ipynb

Last active May 7, 2018 00:59

Using showtext with Jupyter

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slowkow / get_snp_proxies.ipynb

Last active August 9, 2022 00:44

Find SNP proxies in R

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slowkow / add-blank-page-to-pdf.sh

Last active April 22, 2018 13:37

Add a blank page to a pdf

	#!/usr/bin/env bash

	# Count pages in all pdf files in the current directory:
	#
	# pagecount .
	#
	# Count pages in this pdf:
	#
	# pagecount file.pdf
	#

slowkow / try-colortools.ipynb

Created April 20, 2018 17:30

Try the colortools R package

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slowkow / index.html

Last active November 3, 2024 17:38

Karabiner-Elements mouse4 to back and mouse5 to forward

	<html>
	<body>
	<a href="karabiner://karabiner/assets/complex_modifications/import?url=https%3A%2F%2Fgist.githubusercontent.com%2Fslowkow%2F275e53573e2aeb60c8304add1e54faf5%2Fraw%2Fc63540925dba76f46293834c24700ebf1578ed10%2Fmouse-buttons-back-forward.json">click here to import into Karabiner-Elements</a>
	</body>
	</html>

slowkow / Apache www-data setup

Last active August 4, 2024 21:21 — forked from milo/github-webhook-handler.php

Github webhook handler in PHP.

	sudo mkdir -m 0700 /var/www/.ssh
	sudo chown -R www-data:www-data /var/www/.ssh
	sudo -u www-data ssh-keygen (empty passphrase)

	# On Github, paste public key into "Deploy keys"

	sudo -u www-data bash
	cd /path/to/repo
	git clone ...

slowkow / highcharts-scatter-with-colorbar.html

Last active February 11, 2018 19:16

Highcharts scatter plot with a colorbar

	<!-- Put these scripts in the same folder -->
	<script src="jquery-1.11.1.min.js"></script>
	<script src="highcharts.src.js"></script>
	<script src="map.js"></script>
	<script src="exporting.js"></script>

	<div id="container" style="min-width: 310px; height: 400px; margin: 0 auto"></div>

	<script>
	$(function () {

slowkow / .block

Last active October 14, 2017 21:15

Barnsley fern

license: mit

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