smutch

# invoke with:
#   env CC=`which mpicc` HDF5_MPI="ON" MPICC=`which mpicc` conda env create -f=std_conda_environment.yml
name: std
channels:
  - conda-forge
  - defaults
dependencies:
  - nomkl
  - pip
  - black

smutch

#!/usr/bin/env bash

# Generate the appropriate contents of CMAKE_PREFIX_PATH for the loaded set of modules.
# Author: S. Mutch (2019)
#
# Usage:
#    CMAKE_PREFIX_PATH=`cmake_prefix_path` cmake ..

cmake_prefix_path=""

smutch

import numpy as np
import h5py as h5
import xarray as xa
from pathlib import Path
import numba

import pytest

SNAP = 12

smutch

#!/usr/bin/env python

"""A faster-than-pure-python+numpy cloud-in-cell gridding implementation.

**THIS IS A WORK IN PROGRESS AND NOT FULLY TESTED.**

Several assumptions are made:

1. All particles have the same mass (weight)
2. The volume being gridded is an N-dimensional cartesian

smutch

#!/usr/bin/env python
# -*- coding: utf-8 -*-

"""Calculate photo ionisation and photo heating rates for J21 = 1.0 and a given
UV spectral slope value, α.

Sorry for the current lack of comments!
"""

__author__ = "Simon Mutch"

smutch

Meraxes on Raijin

Tested with the following modules:

- Package -----------------------------+- Versions -+- Last mod. ------
gcc/4.9.0                                            2014/07/03  4:40:12
openmpi/4.0.0                                        2019/01/30  4:13:57
cmake/3.14.4                                         2019/05/16 23:37:18
gsl/2.5 2018/06/21 0:53:02

smutch

#!/usr/bin/env python
# -*- coding: utf-8 -*-

from subprocess import run, PIPE
import os
from time import sleep
import click


@click.command()

smutch

With updates to the modules on OzStar, we have to be careful with the modules setup and the flags we pass to Meraxes...

First off - make a copy of you module list so you can return to it if things go wrong:

module -t list >& $HOME/old_modules.txt

then purge your modules and set the purged state to be your default:

smutch

#include <stdio.h>
#include <hdf5.h>
#include <stdlib.h>
#include <hdf5_hl.h>
#include <math.h>

int main() {
    uint dim = 512;
    uint n_cell = (uint)pow(512, 3);
    double fill_frac = 0.6;

smutch

.PHONY: default config cleanbuild

default: build/Makefile
	@make -C build --no-print-directory $(MFLAGS)

config:
	@cmake . -Bbuild $(CMAKE_OPTS)

cleanbuild:
	@rm -r build