| n <- 1e7 | |
| x <- sample(n, size=n, replace=TRUE) | |
| length(unique(x))/n | |
| # [1] 0.6321897 | |
| 1-exp(-1) | |
| # [1] 0.6321206 |
| # Compile and install htslib, bcftools, samtools 1.9 to home directory | |
| # Set up dirs where stuff will be installed | |
| mkdir -p ${HOME}/bin/htslib | |
| mkdir -p ${HOME}/bin/bcftools | |
| mkdir -p ${HOME}/bin/samtools | |
| # Make a dir to build | |
| mkdir -p ${HOME}/tmp |
| # Load some packages | |
| library(knitr) | |
| library(tidyverse) | |
| library(DT) | |
| # Get licenses for all installed packages. | |
| installed_licenses <- installed.packages() %>% | |
| as.data.frame() %>% | |
| rownames_to_column("package") %>% | |
| as_tibble() %>% |
| #!/usr/bin/perl | |
| use warnings; | |
| use strict; | |
| use Getopt::Long; | |
| Getopt::Long::Configure('bundling'); | |
| my ($verbose, $no_act, $force, $op); |
| have <- tibble::tribble( | |
| ~id1, ~id2, ~value, | |
| "a", "b", 1L, | |
| "c", "a", 2L, | |
| "c", "b", 3L | |
| ) | |
| have | |
| want <- tibble::tribble( | |
| ~id1, ~id2, ~value, |
| [ | |
| { | |
| "name": "Sci-Hub Lookup", | |
| "alias": "Sci-Hub", | |
| "icon": "null", | |
| "_urlTemplate": "https://sci-hub.tw/{z:DOI}", | |
| "description": "Sci-Hub full text PDF search", | |
| "hidden": false, | |
| "_urlParams": [], | |
| "_urlNamespaces": { |
| library(tidyverse) | |
| d <- tibble::tribble( | |
| ~disease, ~gene, ~chr, ~inheritance, | |
| "flu", "x", 1L, "infectious", | |
| "flu", "y", 2L, "infectious", | |
| "flu", "z", 3L, "infectious", | |
| "aids", "x", 1L, "st", | |
| "aids", "p", 4L, "st" | |
| ) %>% print() |
| // ==UserScript== | |
| // @name Use My Amazon Affiliate Code | |
| // @namespace http://www.lysator.liu.se/~jhs/userscript | |
| // @description Puts your own Amazon affiliate ID in Amazon links | |
| // @include http://* | |
| // @include https://* | |
| // ==/UserScript== | |
| // leave intact to sponsor my scripting, or set to your own: | |
| const affiliate = 'gettgenedone-20'; |
This list is outdated. This post has a list of bioinformatics/genomics/genetics workshops and training materials that I haven't updated since 2015.
Note that many of the courses shown below also have course materials from past years publicly available online.
Cold Spring Harbor Courses:
| conda create -n gdc python=2.7 libxml2 libxslt libffi gcc progressbar | |
| source activate gdc | |
| git clone https://github.com/NCI-GDC/gdc-client | |
| cd gdc-client | |
| python setup.py install | |