UCSC's track hubs allow multiple wig files to be displayed in a single custom track. Thus possibly overlaying multiple types of data or displaying strand specific read depth. Individual sub-tracks within a custom track can then be toggled on/off.
The official documentation of UCSC's track hubs can be found at http://genome.ucsc.edu/goldenPath/help/hgTrackHubHelp.html.
| # Input: list of rows with format: "<filesize> filename", e.g. | |
| # filesizes.txt | |
| ####################### | |
| # 1000K file1.txt | |
| # 200M file2.txt | |
| # 2G file3.txt | |
| # | |
| # Output: | |
| cat filesizes.txt | numfmt --from=iec | awk 'BEGIN {sum=0} {sum=sum+$1} END {printf "%.0f\n", sum}' |
| import numpy as np | |
| from scipy.sparse import csr_matrix | |
| import torch | |
| __author__ = 'Andrea Esuli' | |
| Acsr = csr_matrix([[1, 2, 0], [0, 0, 3], [4, 0, 5]]) | |
| print('Acsr',Acsr) | |
| Acoo = Acsr.tocoo() |
| import os | |
| import requests # pip install requests | |
| from tqdm import tqdm # pip install tqdm | |
| from tqdm.utils import CallbackIOWrapper | |
| # See: https://gist.github.com/slint/92e4d38eb49dd177f46b02e1fe9761e1 | |
| # See: https://gist.github.com/tyhoff/b757e6af83c1fd2b7b83057adf02c139 | |
| def get_bucket_url(deposit_id: str, access_token: str) -> str: |