Stefan Verhoeven sverhoeven

Snippet

date

. ~/miniconda3/bin/activate rsd
# in new shell
git clone git@github.com:research-software-directory/auth-github.git
cd auth-github
# Created Github oauth app with http://localhost:8000 as callback
# Filled .env with random JWT_SECRET and GITHUB_CLIENT_ID, GITHUB_CLIENT_SECRET
pip install -r requirements.txt 
export $(cat .env | xargs)
python app.py

Convert GENEActiv file to json for use in https://github.com/NLeSC/eEcology-Annotation-UI

Requirements

R libraries:

GENEAread
littler
docopt

	{
	"$schema": "https://vega.github.io/schema/vega-lite/v4.json",
	"width": 800,
	"height": 600,
	"title": {"text": "2x^3 - 4x^2 + 6", "fontSize": 20, "fontWeight": "normal"},
	"layer": [
	{
	"data": {"sequence": {"start": -4, "stop": 4, "step": 0.1, "as": "x"}},
	"transform": [
	{

	{
	"$schema": "https://vega.github.io/schema/vega-lite/v4.json",
	"width": 800,
	"height": 600,
	"layer": [
	{
	"data": {"sequence": {"start": -20, "stop": 20, "step": 0.1, "as": "x"}},
	"transform": [
	{
	"calculate": "datum.x * datum.x * datum.x - datum.x * datum.x + 2",

	[tool.poetry]
	name = "evaluate-gc"
	version = "0.1.0"
	description = ""
	authors = ["Stefan Verhoeven <stefan.verhoeven@gmail.com>"]

	[tool.poetry.dependencies]
	python = "^3.6"
	celery = {extras = ["redis"], version = "^4.4.5"}

	def simfun1(factor=3.0):
	# just some nonsense to demonstrate usage of a parameter
	# when comparing 2 spectrums

	def implementation(spectrum, reference_spectrum):
	print(spectrum)
	print(reference_spectrum)
	print(factor)
	return (max(spectrum) + max(reference_spectrum) ) * factor;

	#!/usr/bin/env python3
	import argparse
	import os

	import yaml
	from ecmwfapi import ECMWFDataServer

	parser = argparse.ArgumentParser(description='''
	Script to download era-interim files so it can be cmorized and used by esmvaltool recipes.

	"""Script to swap donor/acceptor in pharmacophore database file

	original enum is
	Enum({'LIPO': 0, 'POSC': 1, 'HACC': 4, 'NEGC': 2, 'AROM': 5, 'HDON': 3})

	corrected enum is
	Enum({'LIPO': 0, 'POSC': 1, 'HACC': 3, 'NEGC': 2, 'AROM': 5, 'HDON': 4})
	"""

	import sys