I hereby claim:
- I am terrycojones on github.
- I am terrycojones (https://keybase.io/terrycojones) on keybase.
- I have a public key whose fingerprint is DA37 724E D2C7 CF8A E792 99A9 F18B DFFA 72B5 F70B
To claim this, I am signing this object:
Terry Jones terrycojones
terrycojones
/ gist:2cdf9358aa1f91aa7f53
Created
June 5, 2014 12:16
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| #!/usr/bin/env python | |
| import os | |
| from collections import defaultdict | |
| def parseColors(colors): | |
| """ | |
| Parse read id color specification. |
terrycojones
/ gist:444c9b4d246fe123e9c7
Created
May 27, 2014 11:40
NCBI (compressed) data set sizes
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| 16SMicrobial: 2.21 MB (1 parts) | |
| cdd_delta: 873.31 MB (1 parts) | |
| env_nr: 0.99 GB (2 parts) | |
| env_nt: 3.06 GB (4 parts) | |
| est: 284 B (1 parts) | |
| est_human: 1.26 GB (2 parts) | |
| est_mouse: 682.56 MB (1 parts) | |
| est_others: 9.52 GB (11 parts) | |
| gss: 6.57 GB (7 parts) | |
| gss_annot: 36.39 MB (1 parts) |
terrycojones
/ keybase.md
Created
March 12, 2014 21:18
terrycojones
/ gist:9345061
Created
March 4, 2014 11:50
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| 1: count= 67, len= 3620, min(e)= 0.0 median(e)= 1.31674e-63: gi|6561412|gb|AF191073.1|AF191073 Stealth virus 1 clone 3B43, genomic sequence | |
| 2: count= 31, len= 814, min(e)= 2.04982e-153 median(e)= 1.56463e-48: gi|6957471|gb|AF065755.1|AF065755 Stealth virus 1 clone 3B43 T3 | |
| 3: count= 7, len= 836, min(e)= 1.70374e-79 median(e)= 4.20903e-35: gi|6940537|gb|AF065756.1|AF065756 Stealth virus 1 clone 3B43 T7 | |
| 4: count= 6, len= 290, min(e)= 6.41028e-62 median(e)= 3.398355e-61: gi|38569384|gb|AY397620.1| Bluetongue virus isolate 10 5' UTR | |
| 5: count= 12, len= 193, min(e)= 1.91051e-37 median(e)= 2.744805e-37: gi|84579786|dbj|AB214978.1| Human picobirnavirus pseudogene for RNA-dependent RNA polymerase | |
| 6: count= 18, len= 104710, min(e)= 1.33442e-23 median(e)= 1.571805e-23: gi|84683224|gb|DQ333351.1| Choristoneura occidentalis granulovirus, complete genome | |
| 7: count= 8, len= 1923, min(e)= |
terrycojones
/ gist:9111253
Last active
August 29, 2015 13:56
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| class FakeCursor(object): | |
| def close(self): | |
| pass | |
| class FakeDbConnection(object): | |
| def __init__(self, result): | |
| self._result = result | |
| def cursor(self): | |
| return FakeCursor() |
terrycojones
/ gist:8049378
Created
December 20, 2013 02:00
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| WORKING: | |
| https://sandbox.fluidinfo.com/values?query=fluiddb%2Fabout%20%3D%20%22%23%CE%B1%CE%BE%CE%B9%CE%BF%CE%BB%CF%8C%CE%B3%CE%B7%CF%83%CE%B7%22%20or%20fluiddb%2Fabout%20%3D%20%22%23gmt%22%20or%20fluiddb%2Fabout%20%3D%20%22%23apple%22%20or%20fluiddb%2Fabout%20%3D%20%22%23client%22%20or%20fluiddb%2Fabout%20%3D%20%22%23pajama%22%20or%20fluiddb%2Fabout%20%3D%20%22%23geeky%22%20or%20fluiddb%2Fabout%20%3D%20%22%23corruption%22%20or%20fluiddb%2Fabout%20%3D%20%22%23skyler_white%22%20or%20fluiddb%2Fabout%20%3D%20%22%23tag%22%20or%20fluiddb%2Fabout%20%3D%20%22%23subject_with_parentheses%22%20or%20fluiddb%2Fabout%20%3D%20%22%23cases%22%20or%20fluiddb%2Fabout%20%3D%20%22%23riddler%22%20or%20fluiddb%2Fabout%20%3D%20%22%23qwe%22%20or%20fluiddb%2Fabout%20%3D%20%22%23testing%22&tag=* | |
| FAILING: | |
| https://sandbox.fluidinfo.com/values?query=fluiddb%2Fabout%20%3D%20%22%23%CE%B1%CE%BE%CE%B9%CE%BF%CE%BB%CF%8C%CE%B3%CE%B7%CF%83%CE%B7%22%20or%20fluiddb%2Fabout%20%3D%20%22%23gmt%22%20or%20fluiddb%2Fabout%20%3D%20%22%23apple%22%20or |
terrycojones
/ gist:7787320
Created
December 4, 2013 13:19
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| def _getRange(inputRange): | |
| if inputRange is None: | |
| return None | |
| rangeRegex = compile(r'^(\d+)(?:-(\d+))?$') | |
| ranges = [] | |
| match = rangeRegex.match(inputRange) | |
| if match: | |
| start, end = match.groups() | |
| start = int(start) | |
| if end is None: |
terrycojones
/ gist:6348822
Created
August 27, 2013 01:50
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| def testErrbackedDeferredFiresWithTheRightResult(self): | |
| """ | |
| The pool must correctly pass the original deferred errback result | |
| through any callbacks it might have added. | |
| """ | |
| expectedValue = Exception() | |
| pool = DeferredPool() | |
| d = Deferred() | |
| pool.add(d) | |
| pool.notifyWhenEmpty() |
terrycojones
/ gist:6346959
Created
August 26, 2013 21:37
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| # Copyright 2013 Terry Jones ([email protected]). All Rights Reserved. | |
| # | |
| # Redistribution and use in source and binary forms, with or without | |
| # modification, are permitted provided that the following conditions are met: | |
| # | |
| # 1. Redistributions of source code must retain the above copyright notice, this | |
| # list of conditions and the following disclaimer. | |
| # | |
| # 2. Redistributions in binary form must reproduce the above copyright notice, | |
| # this list of conditions and the following disclaimer in the documentation |
terrycojones
/ gist:5253419
Created
March 27, 2013 11:07
haproxy logging conf (/etc/rsyslog.d/49-haproxy.conf)
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| # This file added by Terry on Dec 3, 2012 | |
| # See http://kvz.io/blog/2010/08/11/haproxy-logging/ | |
| $ModLoad imudp | |
| $UDPServerAddress 127.0.0.1 | |
| $UDPServerRun 514 | |
| local1.* -/var/log/haproxy_1.log | |
| & ~ | |
| # & ~ means not to put what matched in the above line anywhere else for the rest of the rules |