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June 6, 2017 11:00
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Synaptic scaling hack for Brian 2
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{ | |
"cells": [ | |
{ | |
"cell_type": "code", | |
"execution_count": 1, | |
"metadata": { | |
"collapsed": true, | |
"deletable": true, | |
"editable": true, | |
"level": 7 | |
}, | |
"outputs": [], | |
"source": [ | |
"from brian2 import *\n", | |
"prefs.codegen.target = 'numpy'" | |
] | |
}, | |
{ | |
"cell_type": "code", | |
"execution_count": 4, | |
"metadata": { | |
"collapsed": false, | |
"deletable": true, | |
"editable": true, | |
"level": 7 | |
}, | |
"outputs": [ | |
{ | |
"name": "stdout", | |
"output_type": "stream", | |
"text": [ | |
"[ 1.42080708 2.11369193]\n", | |
"<neurongroup_1.wsum: array([ 1.42080708, 2.11369193])>\n" | |
] | |
} | |
], | |
"source": [ | |
"start_scope()\n", | |
"\n", | |
"eqs_G = '''\n", | |
"dv/dt = -v/(10*ms) : 1\n", | |
"'''\n", | |
"G = NeuronGroup(3, eqs_G, threshold='v>1', reset='v=0',\n", | |
" events={'compute_wsum': 'True'})\n", | |
"eqs_H = '''\n", | |
"dv/dt = -v/(10*ms) : 1\n", | |
"wsum : 1\n", | |
"'''\n", | |
"H = NeuronGroup(2, eqs_H, threshold='v>1', reset='v=0')\n", | |
"H.run_regularly('wsum = 0')\n", | |
"S = Synapses(G, H, 'w : 1', on_pre={'pre': 'v += w',\n", | |
" 'wsum': 'wsum += w'},\n", | |
" on_event={'pre':'spike', 'wsum': 'compute_wsum'})\n", | |
"S.wsum.order = -1\n", | |
"S.connect()\n", | |
"S.w = 'rand()'\n", | |
"\n", | |
"run(1*ms)\n", | |
"\n", | |
"M = zeros((3, 2))\n", | |
"M[S.i, S.j] = S.w\n", | |
"print sum(M, axis=0)\n", | |
"print H.wsum" | |
] | |
} | |
], | |
"metadata": { | |
"hide_input": false, | |
"kernelspec": { | |
"display_name": "Python [default]", | |
"language": "python", | |
"name": "python2" | |
}, | |
"language_info": { | |
"codemirror_mode": { | |
"name": "ipython", | |
"version": 2 | |
}, | |
"file_extension": ".py", | |
"mimetype": "text/x-python", | |
"name": "python", | |
"nbconvert_exporter": "python", | |
"pygments_lexer": "ipython2", | |
"version": "2.7.12" | |
} | |
}, | |
"nbformat": 4, | |
"nbformat_minor": 2 | |
} |
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