thomasaarholt

SAM = m.create_samfire()
---------------------------------------------------------------------------
KeyError                                  Traceback (most recent call last)
<ipython-input-21-edd4774a10cd> in <module>()
----> 1 SAM = m.create_samfire()

/Users/thomas/Dropbox/0_Git/GitHub/hyperspy_aar/hyperspy/model.py in create_samfire(self, workers, setup, **kwargs)
   1780         from hyperspy.samfire import Samfire
   1781         return Samfire(self, workers=workers,
-> 1782                        setup=setup, **kwargs)

thomasaarholt

def fit_Zr_L(sZr, ll=None):
    "Fits the Zr L lines, return a hyperspy model. Input is a Zr spectrum image, and optionally, the accompanying low loss SI."
    print("Will produce 10 progress bars")
    
    mZr = sZr.create_model(ll = ll, GOS="Hartree-Slater", auto_add_edges=False)
    # Fit Background
    mZr.fit_component(mZr["PowerLaw"], bounded=True, signal_range=[2150.,2210.], fit_independent=True, only_current=True)
    mZr.assign_current_values_to_all()
    mZr.fit_component(mZr["PowerLaw"], bounded=True, signal_range=[2150.,2210.], fit_independent=True, only_current=False)

thomasaarholt

m = Zr.create_model(ll, GOS="Hartree-Slater")

Zr_L3_white = hs.model.components1D.Gaussian()
Zr_L3_white.name = "Zr L3 White Line"
Zr_L3_white.centre.bmin = 2218.0
Zr_L3_white.centre.bmax = 2240.0
Zr_L3_white.sigma.bmax=3
Zr_L3_white.A.bmin = 0

Zr_L2_white = hs.model.components1D.Gaussian()

thomasaarholt

>>> m.fit(fitter="L-BFGS-B", bounded=True, grad=True)
---------------------------------------------------------------------------
TypeError                                 Traceback (most recent call last)
<ipython-input-118-e2c35f346c6e> in <module>()
     50 
     51 #m.fit(fitter="leastsq", bounded=True, grad=True)
---> 52 m.fit(fitter="L-BFGS-B", bounded=True, grad=True)
     53 
     54 

thomasaarholt

(C:\ProgramData\Miniconda3) C:\Users\thomasaar>pip install -e M:\pc\Dokumenter\GitHub\hyperspy
Obtaining file:///M:/pc/Dokumenter/GitHub/hyperspy
    Complete output from command python setup.py egg_info:
    test_compilers.c
    Traceback (most recent call last):
      File "<string>", line 1, in <module>
      File "M:\pc\Dokumenter\GitHub\hyperspy\setup.py", line 295, in <module>
        with update_version_when_dev() as version:
      File "M:\pc\Dokumenter\GitHub\hyperspy\setup.py", line 273, in __enter__

thomasaarholt

PS C:\Users\thomasaar\Downloads\hyperspy> pip install -e ./
Obtaining file:///C:/Users/thomasaar/Downloads/hyperspy
    Complete output from command python setup.py egg_info:
    test_compilers.c
    Traceback (most recent call last):
      File "<string>", line 1, in <module>
      File "C:\Users\thomasaar\Downloads\hyperspy\setup.py", line 294, in <module>
        with update_version_when_dev() as version:
      File "C:\Users\thomasaar\Downloads\hyperspy\setup.py", line 272, in __enter__
        stdout=subprocess.PIPE)

thomasaarholt

# When stepping through the signal looking for spikes, suddenly:

Exception occurred in traits notification handler for object: <hyperspy.signal_tools.SpikesRemoval object at 0x12835e048>, trait: ss_right_value, old value: nan, new value: 0.0
Traceback (most recent call last):
  File "/Users/thomas/miniconda3/envs/hs/lib/python3.5/site-packages/traits/trait_notifiers.py", line 340, in __call__
    self.handler( *args )
  File "/Users/thomas/hyperspy/hyperspy/signal_tools.py", line 968, in _ss_right_value_changed
    self.span_selector_changed()
  File "/Users/thomas/hyperspy/hyperspy/signal_tools.py", line 1047, in span_selector_changed
    self.interpolated_line.update()

thomasaarholt

---------------------------------------------------------------------------
TypeError                                 Traceback (most recent call last)
/Users/thomas/hyperspy/hyperspy/gui_ipywidgets/tools.py in on_remove_clicked(b)
    416 
    417     def on_remove_clicked(b):
--> 418         obj.apply()
    419     remove.on_click(on_remove_clicked)
    420     labeled_spline_order = labelme("Spline order", spline_order)

/Users/thomas/hyperspy/hyperspy/signal_tools.py in apply(self)

thomasaarholt

def create_Line_on_DF(s, lineROI=[], hide=False):
    """
    Plots a hyperspy signal and draws an interactive ROI on it on the top left tenth of the image.
    Can take a list of [x1, y1, x2, y2, linewidth] to set a known intial ROI.
    Returns a tuple of (roi, roi_signal). Use hide=True to not show the plot.
    Please report bugs/improvements to [email protected]
    """
    import hyperspy.api as hs

    if s.axes_manager.navigation_dimension < 2:

thomasaarholt

import os

import ipywidgets as widgets


class FileBrowser(object):
    def __init__(self):
        self.path = os.getcwd()
        self._update_files()