tlambert03

{
  "title": "OME",
  "description": "The OME element is a container for all information objects accessible by OME.\n\nThese information objects include descriptions of the imaging experiments and\nthe people who perform them, descriptions of the microscope, the resulting\nimages and how they were acquired, the analyses performed on those images, and\nthe analysis results themselves. An OME file may contain any or all of this\ninformation.\n\nWith the creation of the Metadata Only Companion OME-XML and Binary Only OME-\nTIFF files the top level OME node has changed slightly. It can EITHER: Contain\nall the previously expected elements OR: Contain a single BinaryOnly element\nthat points at its Metadata Only Companion OME-XML file.\n\nParameters\n----------\nbinary_only : BinaryOnly, optional\n    Pointer to an external metadata file. If this              element is\n    present, then no other metadata may be present in this\n    file, i.e. this file is a place-holder.\ncreator : str, optional\n    This is the

tlambert03

"""
This requires jpype:  `pip install jpype1`
You will also need to have java accessible (`conda install openjdk` works)
Lastly, download the loci_tools.jar from:
https://downloads.openmicroscopy.org/bio-formats/latest/artifacts/

and set the path in the `LOCI` variable below
"""
from ome_types import from_xml

tlambert03

from typing import Container
from magicgui import magicgui, widgets
from qtpy.QtWidgets import QWidget, QVBoxLayout


@magicgui
def my_widget(x: int): ...

    
# in pseudocode the above is similar to

tlambert03

from napari.layers import Image, Layer
from magicgui import magicgui


def custom_get_layers(combo_widget):
    from napari.utils._magicgui import find_viewer_ancestor
    viewer = find_viewer_ancestor(combo_widget.native)
    if not viewer:
        return []
    

tlambert03

from typing import Callable, Optional, TypeVar, overload, Union
from typing_extensions import ParamSpec, Literal
from functools import wraps

P = ParamSpec("P")
R = TypeVar("R")


@overload
def decorator(func: Callable[P, R], param: int = ...) -> Callable[P, R]:

tlambert03

import re
import shutil
import sys
from pathlib import Path
from subprocess import check_call
from typing import Any, Dict, Sequence, Union

from grayskull.strategy.pypi import (
    PYPI_CONFIG,
    Configuration,

tlambert03

# modified from https://github.com/adamkglaser/io_benchmarks

import threading
import multiprocessing
import zarr
import numpy as np
import z5py
import h5py
import tifffile
import dask.array as da

tlambert03

from graphviz import Digraph
from vispy import scene

def trace(root):
    nodes, edges = set(), set()
    def build(v):
        if v not in nodes:
            nodes.add(v)
            for child in v.children:
                edges.add((child, v))

tlambert03

tlambert03