Timothée Poisot tpoisot
🌴
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| library(igraph) | |
| library(plyr) | |
| nl <- function(gl) sum(aaply(gl, 1, function(x) x[1] == x[2])) | |
| nd <- function(gl) nrow(gl) - nrow(unique(aaply(gl, 1, sort))) | |
| permut_graph <- function(g){ | |
| gl <- get.edgelist(g) | |
| L <- nl(gl) | |
| D <- nd(gl) |
tpoisot
/ logisticmap.jl
Created
October 4, 2014 06:08
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| using Base.Test | |
| using Gadfly | |
| logistic_growth = (x, r) -> r*x*(1-x) | |
| function logistic_map(x::Number, r::Float64, n::Int64) | |
| @test x > 0 | |
| @test x <= 1 | |
| orbit = zeros(Float64, n) | |
| orbit[1] = x |
tpoisot
/ logisticmap.jl
Created
October 3, 2014 03:23
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| using Base.Test | |
| using Gadfly | |
| logistic_growth = (x, r) -> r*x*(1-x) | |
| function logistic_map(x::Number, r::Float64, n::Int64) | |
| @test x > 0 | |
| @test x <= 1 | |
| orbit = zeros(Float64, n) | |
| orbit[1] = x |
tpoisot
/ credentials.json
Last active
August 29, 2015 14:05
Use with ./get_tweets.py 10 3 test.json openscience opendata
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| { | |
| "c_key": "ConsumerKey", | |
| "c_sec": "ConsumerSecret", | |
| "t_key": "TokenKey", | |
| "t_sec": "TokenSecret" | |
| } |
We can make this file beautiful and searchable if this error is corrected: No commas found in this CSV file in line 0.
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| day;I | |
| 0;1 | |
| 1;3 | |
| 2;7 | |
| 3;25 | |
| 4;72 | |
| 5;222 | |
| 6;282 | |
| 7;256 | |
| 8;233 |
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| using Distributions | |
| #= | |
| ABC rejection smapling | |
| This code estimates the value of two parameters (optimum and tolerance) | |
| for simulated data of fitness along a gradient of x values. The fitness is | |
| given by a Gaussian function. |
tpoisot
/ library.json
Created
June 9, 2014 16:18
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| [{"DOI": "10.1002/ece3.508", "subtitle": [], "URL": "http://dx.doi.org/10.1002/ece3.508", "issued": {"date-parts": [[2013, 4]]}, "volume": "3", "prefix": "http://id.crossref.org/prefix/10.1002", "id": "Poisot2013", "publisher": "Wiley-Blackwell", "author": [{"given": "Timoth\u00e9e", "family": "Poisot"}, {"given": "B\u00e9rang\u00e8re", "family": "P\u00e9quin"}, {"given": "Dominique", "family": "Gravel"}], "issue": "4", "reference-count": 123, "ISSN": ["2045-7758"], "source": "CrossRef", "score": 1.0, "deposited": {"timestamp": 1372118400000, "date-parts": [[2013, 6, 25]]}, "container-title": "Ecol Evol", "indexed": {"timestamp": 1400774816596, "date-parts": [[2014, 5, 22]]}, "title": "High-Throughput Sequencing: A Roadmap Toward Community Ecology", "type": "article-journal", "page": "1125-1139"}] |
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| test |
tpoisot
/ vim-version
Created
April 10, 2014 15:55
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| ~ $ vim --version | |
| VIM - Vi IMproved 7.4 (2013 Aug 10, compiled Mar 24 2014 19:36:05) | |
| Rustines incluses : 1-214 | |
| Compilé par Arch Linux | |
| Énorme version avec interface graphique GTK2. | |
| Fonctionnalités incluses (+) ou non (-) : | |
| +acl +farsi +mouse_netterm +syntax | |
| +arabic +file_in_path +mouse_sgr +tag_binary | |
| +autocmd +find_in_path -mouse_sysmouse +tag_old_static | |
| +balloon_eval +float +mouse_urxvt -tag_any_white |
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| library(RColorBrewer) | |
| library(shape) | |
| dndt = function(n1, n2, params) | |
| { | |
| with(as.list(params),{ | |
| dn1 = r1 * (1 - (a11 * n1 + a12 * n2)/k1) | |
| dn2 = r2 * (1 - (a22 * n2 + a21 * n1)/k2) | |
| return(list(dn1 = dn1, dn2 = dn2)) | |
| }) |