tsibley

diff --git a/nextstrain/cli/runner/managed_conda.py b/nextstrain/cli/runner/managed_conda.py
index c970f32..14602fd 100644
--- a/nextstrain/cli/runner/managed_conda.py
+++ b/nextstrain/cli/runner/managed_conda.py
@@ -16,7 +16,7 @@ from ..types import RunnerSetupStatus, RunnerTestResults, RunnerUpdateStatus
 from ..util import capture_output, exec_or_return, user_app_data_dir, warn
 
 
-USER_APP_DATA_DIR = user_app_data_dir()
+USER_APP_DATA_DIR = user_app_data_dir(avoid_spaces = True)

tsibley

diff --git a/nextstrain/cli/util.py b/nextstrain/cli/util.py
index 7fa5f11..a05f501 100644
--- a/nextstrain/cli/util.py
+++ b/nextstrain/cli/util.py
@@ -505,13 +505,19 @@ def glob_match(path: Union[str, Path], patterns: Union[str, Sequence[str]]) -> b
     return globmatch(path, patterns, flags = GLOBSTAR | BRACE | EXTGLOB | MATCHBASE | NEGATE)
 
 
-def user_app_data_dir() -> Path:
+def user_app_data_dir(avoid_spaces: bool = False) -> Path:

tsibley

From 74384936ab3b9354a57baf3291462c9fdd57d90a Mon Sep 17 00:00:00 2001
From: Thomas Sibley <tsibley@fredhutch.org>
Date: Wed, 21 Sep 2022 15:45:11 -0700
Subject: [PATCH] wip! footing

---
 Dockerfile       | 10 ++++++++--
 devel/build      | 21 +++++++++++++++++++--
 devel/pull       |  4 +++-
 devel/push       | 15 ++++++++++-----

tsibley

ps1() {
    # Bold, bright white text (fg)…
    printf '\[\e[1;97m\]'

    local -a wordmark=(
        '#4377cd  '
        '#4377cd N'
        '#5097ba e'
        '#63ac9a x'
        '#7cb879 t'

tsibley

diff --git a/bin/standalone-installer-unix b/bin/standalone-installer-unix
index e11445a..bfdfd3d 100755
--- a/bin/standalone-installer-unix
+++ b/bin/standalone-installer-unix
@@ -234,4 +234,6 @@ die() {
     exit 1
 }
 
-main "$@"
+if [[ -z "$BASH_SOURCE" || "$BASH_SOURCE" == "$0" ]]; then

tsibley

From c65b3d35c4057f7cb89ad60319bedb4fc0ca811e Mon Sep 17 00:00:00 2001
From: Thomas Sibley <tsibley@fredhutch.org>
Date: Tue, 13 Sep 2022 15:28:18 -0700
Subject: [PATCH] wip! managed-conda: Strict isolation mode

---
 nextstrain/cli/command/shell.py        | 13 ++++---
 nextstrain/cli/runner/managed_conda.py | 47 ++++++++++++++++++--------
 2 files changed, 42 insertions(+), 18 deletions(-)

tsibley

import itertools
from rich.console import Console as RichConsole
from rich.text import Text as RichText
from typing import Union


flatten = itertools.chain.from_iterable


def heading(console: RichConsole, title: str) -> Union[str, RichText]:

tsibley

From bf2fb3d9db142a57031ebdd4134c0d819d5ca910 Mon Sep 17 00:00:00 2001
From: Thomas Sibley <tsibley@fredhutch.org>
Date: Thu, 30 Sep 2021 17:00:43 -0700
Subject: [PATCH] wip! ES modules

---
 Procfile                |  2 +-
 README.md               | 10 +++++-----
 develop.sh              |  2 +-
 docs/api.md             |  2 +-

tsibley

diff --git a/src/app.js b/src/app.js
index 75b14b7..4a03fb4 100644
--- a/src/app.js
+++ b/src/app.js
@@ -20,6 +20,7 @@ const PRODUCTION = process.env.NODE_ENV === "production";
 const CANARY_ORIGIN = process.env.CANARY_ORIGIN;
 
 const authn = require("./authn");
+const authz = require("./authz");
 const endpoints = require("./endpoints");

tsibley

async function map(iterable, fn = x => x) {
  let array;

  if (iterable.map) {
    array = iterable;
  } else {
    array = [];
    for await (const x of iterable) {
      array.push(x);
    }