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#!/usr/bin/env bash
#
#
# Copyright 2013-2020 - Ingy döt Net <[email protected]>
#

### INLINED License (0.4.6, 110b9eb13f259986fffcf11e8fb187b8cce50921)
# The MIT License (MIT)
# 
# Copyright (c) 2013-2020 Ingy döt Net

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#!/usr/bin/env perl
use strict;
use warnings;

use Module::Runtime qw< require_module >;
use Text::CSV;

my $filename = $ARGV[0];
my $parser_class = $filename =~ /\.xlsx$/
    ? "Spreadsheet::ParseXLSX"

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"""
Threading utilities.
"""
from threading import Thread, Event


class StoppableThread(Thread):
    """
    A :cls:`Thread` with a :meth:`.stop` function and :attr:`.stopped`
    attribute.

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class CognitoSession:
    def __init__(self, origin: Origin) -> None:
        assert origin
        self.origin = origin

        # Public ids.  Client id is specific to the CLI.
        user_pool_id = os.environ.get("NEXTSTRAIN_COGNITO_USER_POOL_ID") \
                    or client_config(origin)["aws_cognito_user_pool_id"]

        client_id = os.environ.get("NEXTSTRAIN_COGNITO_CLI_CLIENT_ID") \

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diff --git a/nextstrain/cli/authn.py b/nextstrain/cli/authn.py
index 93515ce..6cd2af0 100644
--- a/nextstrain/cli/authn.py
+++ b/nextstrain/cli/authn.py
@@ -173,6 +173,26 @@ def logout(origin: Origin):
         print(f"Not logged in to {origin}.", file = stderr)
 
 
+def logout_all():
+    """

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    sequenceDiagram
        actor user as User
        participant cli as Nextstrain CLI
        participant .org as nextstrain.org
        participant idp as IdP

        user->>cli: nextstrain login
        activate cli

        note over cli: generates {uuid} (v4)

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diff --git a/src/resourceIndex.js b/src/resourceIndex.js
index 3bcffee4..886f2a74 100644
--- a/src/resourceIndex.js
+++ b/src/resourceIndex.js
@@ -1,6 +1,7 @@
 import fs from 'fs';
 import * as utils from './utils/index.js';
 import zlib from 'zlib';
+import { DateTime } from 'luxon';
 import { promisify } from 'util';

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From 5de6c904a6be1c775a576f6497e8a7a2c1f2f06b Mon Sep 17 00:00:00 2001
From: James Hadfield <[email protected]>
Date: Mon, 25 Sep 2023 13:32:49 +1300
Subject: [PATCH] Collect resources from core + staging buckets

This sets out the pattern for reading S3 inventories and turning them
into resource collections. The JSON output will ultimately be used by
nextstrain.org to both provide a listing of available resources and to
be queried by versioned dataset requests (in order to go from a
requested date to the corresponding S3 version IDs of the relevant

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commit b8de8d5d3dbce28d12b5d946c2f6f1cbf7becfbb
Author: Thomas Sibley <[email protected]>
Date:   Mon Oct 30 13:46:58 2023 -0700

    wip! version extractor
    
    XXX FIXME: how far to take @ as not a given?  i.e. update canonicalizeDataset to make the caller add the version?
    XXX FIXME: default to extracting a version?
    XXX FIXME: move core version extractor into a function we pass?
    XXX FIXME: use route matching instead to make versionExtractor like: req => req.params.versionDescriptor?

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diff --git a/resourceIndexer/constants.js b/resourceIndexer/constants.js
index f22e209e..ce67d5f8 100644
--- a/resourceIndexer/constants.js
+++ b/resourceIndexer/constants.js
@@ -7,16 +7,21 @@ export const INVALID_AUSPICE_PATTERNS = [/_seq\.json$/, /_sequences\.json$/, /_e
  * The keys here represent the subresource type of these files used internally
  * in the server code (encoded there as the 2nd argument when instantiating
  * (sub-)classes of `Subresource`)
+ *
+ * Matched against filenames to classify them, in order, with the first match