Requirements and considerations for deploying the nextstrain.org server in production.
Thomas Sibley tsibley
tsibley
/ nopaste.diff
Created
October 31, 2023 00:04
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| diff --git a/resourceIndexer/coreStagingS3.js b/resourceIndexer/coreStagingS3.js | |
| index ad1cce9d..78cc2284 100644 | |
| --- a/resourceIndexer/coreStagingS3.js | |
| +++ b/resourceIndexer/coreStagingS3.js | |
| @@ -1,6 +1,7 @@ | |
| import {logger} from './logger.js'; | |
| import { SOURCE, VALID_AUSPICE_PATTERNS, INVALID_AUSPICE_PATTERNS, | |
| DATESTAMP_REGEX, MAIN_DATASET_JSON } from './constants.js'; | |
| +import { fetchInventoryRemote, fetchInventoryLocal, parseInventory } from './inventory.js'; | |
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| """\ | |
| DOCSTRING\ | |
| """ | |
| print(__doc__) | |
| if __debug__: | |
| print("DEBUGGING") | |
| if not __debug__: |
tsibley
/ production.rst
Created
October 20, 2023 22:29
tsibley
/ restart-when-stalled
Created
October 15, 2023 07:43
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| #!/usr/bin/env python3 | |
| """ | |
| usage: restart-when-stalled <timeout> <cmd> | |
| restart-when-stalled --help | |
| Runs <cmd> via the shell ({SHELL}) and monitors its stdout. | |
| If <timeout> seconds pass without output, the <cmd> process | |
| is stopped and <cmd> is restarted. | |
| The <cmd> process is stopped by sending SIGTERM, waiting up |
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| const config = JSON.parse(localStorage.getItem("localConfig_v2")); | |
| for (const [teamId, team] of Object.entries(config.teams)) { | |
| team.is_unified_user_client_enabled = false; | |
| } | |
| localStorage.setItem("localConfig_v2", JSON.stringify(config)); | |
| window.location.reload(); |
tsibley
/ stylus-2023-09-06.json
Created
September 6, 2023 19:13
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| [ | |
| { | |
| "settings": { | |
| "openEditInWindow": false, | |
| "openEditInWindow.popup": false, | |
| "windowPosition": {}, | |
| "show-badge": true, | |
| "disableAll": false, | |
| "exposeIframes": false, | |
| "exposeStyleName": false, |
tsibley
/ nextstrain-base-20230717T174555Z-vs-20230830T164409Z.diff
Created
September 1, 2023 18:17
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| diff --git a/a.json b/b.json | |
| index 24c633a..5621bff 100644 | |
| --- a/a.json | |
| +++ b/b.json | |
| @@ -1,12 +1,12 @@ | |
| { | |
| - "key": "nextstrain-base-20230717T174555Z-hb0f4dca_0_locked.conda", | |
| + "key": "nextstrain-base-20230830T164409Z-hb0f4dca_0_locked.conda", | |
| "value": { | |
| - "sha256": "6c674e7a7336558cfee106b858e2999b818cd07fd7a83fd11a85f54302028810", |
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| diff --git a/aws/cognito/outputs.tf b/aws/cognito/outputs.tf | |
| index db9e9c0d..3e7f55d2 100644 | |
| --- a/aws/cognito/outputs.tf | |
| +++ b/aws/cognito/outputs.tf | |
| @@ -2,6 +2,7 @@ output "COGNITO_USER_POOL_ID" { | |
| value = aws_cognito_user_pool.nextstrain_dot_org.id | |
| } | |
| +# XXX FIXME | |
| output "COGNITO_BASE_URL" { |
tsibley
/ job-timeout-chaining.patch
Created
August 22, 2023 17:14
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| diff --git a/.github/workflows/ci.yaml b/.github/workflows/ci.yaml | |
| index 38bec9b..4bf6219 100644 | |
| --- a/.github/workflows/ci.yaml | |
| +++ b/.github/workflows/ci.yaml | |
| @@ -65,5 +65,6 @@ jobs: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| + - run: make check | |
| - run: ./devel/check-readme |
tsibley
/ 0001-wip-soliloquizing-bronchitis-s.patch
Created
August 4, 2023 18:20
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| From be6036a097e3016f2c21e5f54847eb90d12efea1 Mon Sep 17 00:00:00 2001 | |
| From: Thomas Sibley <[email protected]> | |
| Date: Fri, 4 Aug 2023 11:02:22 -0700 | |
| Subject: [PATCH] wip! soliloquizing bronchitis's | |
| --- | |
| .github/workflows/pathogen-repo-build.yaml | 68 +++++++++++++++++++++- | |
| 1 file changed, 66 insertions(+), 2 deletions(-) | |
| diff --git a/.github/workflows/pathogen-repo-build.yaml b/.github/workflows/pathogen-repo-build.yaml |