John Wieczorek tucotuco
tucotuco
/ gist:8012222
Created
December 17, 2013 20:39
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| Generating public/private rsa key pair. | |
| open /home/hadoop/.ssh/id_rsa failed: No such file or directory. | |
| Saving the key failed: /home/hadoop/.ssh/id_rsa. | |
| chmod: cannot access `/home/hadoop/.ssh/id_rsa': No such file or directory | |
| ./bootstrap.sh: line 17: /home/hadoop/.ssh/known_hosts: No such file or directory | |
| ./bootstrap.sh: line 21: /home/hadoop/.bashrc: No such file or directory | |
| ./bootstrap.sh: line 24: /home/hadoop/.bashrc: No such file or directory | |
| ./bootstrap.sh: line 27: /home/hadoop/.bashrc: No such file or directory | |
| ./bootstrap.sh: line 28: /home/hadoop/.bashrc: No such file or directory | |
| ./bootstrap.sh: line 30: /home/hadoop/.bashrc: No such file or directory |
tucotuco
/ gist:7934742
Created
December 12, 2013 20:21
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| gulo.harvest=> (harvest-all "/mnt/beast" :path-file "/home/ubuntu/resource_list.txt") | |
| "Harvesting 1 resources" | |
| "Downloading records from http://ipt.vertnet.org:8080/ipt/resource.do?r=ccber_mammals" | |
| " records found" | |
| "Writing to /mnt/beast/2013-12-12/ccber_mammals-6caea6d4-b677-4e29-b574-0165e55b2396/ccber_mammals-6caea6d4-b677-4e29-b574-0165e55b2396.csv" | |
| "Done harvesting ccber_mammals" | |
| "Copying /mnt/beast/2013-12-12/ccber_mammals-6caea6d4-b677-4e29-b574-0165e55b2396 to gs://vn-harvest/data/2013-12-12/" | |
| "Harvest complete." | |
| nil |
tucotuco
/ gist:7901592
Created
December 10, 2013 22:34
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| ERROR 2013-12-10 21:10:00,214 wsgi.py:262] | |
| Traceback (most recent call last): | |
| File "/Users/tuco/bin/google_appengine/google/appengine/runtime/wsgi.py", line 239, in Handle | |
| handler = _config_handle.add_wsgi_middleware(self._LoadHandler()) | |
| File "/Users/tuco/bin/google_appengine/google/appengine/api/lib_config.py", line 353, in __getattr__ | |
| self._update_configs() | |
| File "/Users/tuco/bin/google_appengine/google/appengine/api/lib_config.py", line 289, in _update_configs | |
| self._registry.initialize() | |
| File "/Users/tuco/bin/google_appengine/google/appengine/api/lib_config.py", line 164, in initialize | |
| import_func(self._modname) |
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| INFO 2013-12-10 21:10:00,053 appengine_config.py:31] /Users/tuco/Projects/VertNet/webapp/auth.txt | |
| ERROR 2013-12-10 21:10:00,214 wsgi.py:262] | |
| Traceback (most recent call last): | |
| File "/Users/tuco/bin/google_appengine/google/appengine/runtime/wsgi.py", line 239, in Handle | |
| handler = _config_handle.add_wsgi_middleware(self._LoadHandler()) | |
| File "/Users/tuco/bin/google_appengine/google/appengine/api/lib_config.py", line 353, in __getattr__ | |
| self._update_configs() | |
| File "/Users/tuco/bin/google_appengine/google/appengine/api/lib_config.py", line 289, in _update_configs | |
| self._registry.initialize() | |
| File "/Users/tuco/bin/google_appengine/google/appengine/api/lib_config.py", line 164, in initialize |
tucotuco
/ vertnetportalsource.html
Created
July 1, 2013 19:02
IE 8 view source on portal.vertnet.org 1 July 2013
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| <!DOCTYPE html> | |
| <html lang="en"> | |
| <head> | |
| <title></title | |
| <meta charset="utf-8"> | |
| <meta name="viewport" content="width=device-width, initial-scale=1.0"> | |
| <meta name="description" content="VertNet data portal"> | |
| <meta name="author" content="Vertnet project"> | |
| <link href="/css/docs.css" rel="stylesheet"> |
tucotuco
/ has_tissue.py
Last active
December 18, 2015 17:19
Darwin Core record tissue detector. Looking for tissue indicators in the Darwin Core term 'preparations'.
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| def has_tissue(rec): | |
| if rec.has_key('preparations'): | |
| tissuetokens = ["+t", "tiss", "blood", "dmso", "dna", "extract", "froz", | |
| "forzen", "freez", "heart", "muscle", "higado", "kidney", | |
| "liver", "lung", "nitrogen", "pectoral", "ri\x96on", | |
| "kidney", "rnalater", "sample", "sangre", "toe", "spleen"] | |
| for token in tissuetokens: | |
| if token in rec['preparations'].lower(): | |
| return True | |
| return False |
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| def is_number(s): | |
| try: | |
| float(s) | |
| return True | |
| except ValueError: | |
| return False | |
| def valid_latlng(lat,lng): | |
| # accepts lat and lng as strings. | |
| if not is_number(lat): |
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| def has_media(rec): | |
| if rec.has_key('associatedmedia'): | |
| return True | |
| if rec.has_key('type'): | |
| if rec['type'].lower()=='sound': | |
| return True | |
| if 'image' in rec['type'].lower(): | |
| return True | |
| return False | |
| if rec.has_key('basisofrecord'): |
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| def record_type(rec): | |
| if rec.has_key('type'): | |
| if rec['type'].lower() == 'physicalobject': | |
| return 'specimen' | |
| return 'observation' | |
| if rec.has_key('basisofrecord'): | |
| if 'spec' in rec[basisofrecord].lower(): | |
| return 'specimen' | |
| return 'observation' | |
| return 'unknown' |
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| <html> | |
| <head> | |
| <title>Geomancer Test Page</title> | |
| <script src="http://www.desarrolloweb.com/articulos/ejemplos/jquery/jquery-1.3.2.min.js" type="text/javascript"></script> | |
| <script> | |
| function getFormat() { | |
| var ua = $.browser; | |
| if (ua.msie) { | |
| return "&f=csv" | |
| } else { |