John Wieczorek tucotuco

tucotuco / gist:1185565

Created September 1, 2011 06:10

	def georef(self, localities):
	for loc in localities:
	loc.feature_geocodes = {}
	for feature in loc.parts['features']:
	logging.info('Geocoding feature "%s"' % feature)
	key = 'geocode-%s' % feature
	geocode = Cache.get(key)
	if not geocode:
	geocode = self.geocoder.geocode(feature)
	Cache.put(key, geocode)

tucotuco / gist:1169655

Created August 25, 2011 00:25

	occurrenceid,genus,year,country
	1,bufo,1988,china
	2,salmo,1900,united states
	3,tuco,1985,argentina
	4,vultur,2010,chile
	5,atrox,1985,mexico

tucotuco / config.yaml

Created August 23, 2011 22:15

IUCN Mammal example source config file

	# This section provides information about the source, such as name and contact
	# information.
	#
	Source:
	name: IUCN
	email: [email protected]

	# This section provides information about all collections provided by the
	# source.
	#

tucotuco / worldclimmetadata.json

Created August 17, 2011 21:20

Worldclim variable metadata

	{
	"bio19":{
	"maxval":5162,
	"name":"Precipitation of Coldest Quarter",
	"minval":0,
	"created":"2006-01-04",
	"srs":"+proj=longlat +ellps=WGS84 +datum=WGS84 +no_defs",
	"version":"1.4",
	"database":"WorldClim",
	"key":"bio19",

tucotuco / gist:1144440

Created August 14, 2011 00:40

tucotuco / gist:1144358

Created August 13, 2011 23:13

	cells = {}
	dr = csv.DictReader(open(csvfile, 'r'))
	for row in dr:
	cellkey = row.get('CellKey')
	if not cells.has_key(cellkey):
	cells[cellkey] = {
	'_id': cellkey,
	't': options.key, # tile number
	'b': getboundingbox(cellkey, cells_per_degree), # boundingbox
	'v': {} # dictionary of variables (tmean1,...tmin1,...tmax1,...alt,...prec1,...bio1,...)

tucotuco / gist:1144323

Created August 13, 2011 22:39

	newcells = dict((k, simplejson.dumps(v)) for k,v in cells.iteritems())

	dict: {
	'4371-4956': '{"_id": "4371-4956", "b": [["-124.8623682", "48.7"], ["-124.8497538", "48.6916667"]], "t": "11", "v": {"b16": "1092"}}',
	'4374-4956': '{"_id": "4374-4956", "b": [["-124.8245249", "48.7"], ["-124.8119105", "48.6916667"]], "t": "11", "v": {"b16": "1078"}}'
	}

tucotuco / gist:1138950

Created August 11, 2011 05:22

	def __eq__(self, other):
	if not isinstance(other, BoundingBox):
	return NotImplemented
	if self.nw != other.nw:
	return NotImplemented
	if self.se != other.se:
	return NotImplemented
	return True

tucotuco / gist:1130968

Created August 8, 2011 00:14

Proposed aliases for Worldclim variable names

tucotuco / gist:1128686

Created August 5, 2011 22:29

	SELECT
	i_feature_footprint.feature_id, geom_y, geom_x, radius, displayname,
	i_scheme_term.term, g_collection.name, g_collection.mapaccuracyinmeters,
	g_collection.coordprecision
	FROM
	i_feature_footprint,
	g_feature,
	g_feature_displayname,
	i_scheme_term,
	i_classification,